More than 300 homologs were found in PanDaTox collection
for query gene Dshi_2521 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_2521  transcriptional regulator  100 
 
 
225 aa  455  1e-127  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  56.82 
 
 
224 aa  256  1e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  51.61 
 
 
221 aa  227  1e-58  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  45.83 
 
 
220 aa  209  3e-53  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  45.83 
 
 
231 aa  209  3e-53  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  50.79 
 
 
223 aa  209  4e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  42.86 
 
 
230 aa  178  7e-44  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  45.92 
 
 
216 aa  177  1e-43  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  42.47 
 
 
240 aa  173  1.9999999999999998e-42  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  43.38 
 
 
218 aa  169  3e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  43.38 
 
 
218 aa  169  3e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  44.17 
 
 
224 aa  165  4e-40  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  39.52 
 
 
222 aa  162  4.0000000000000004e-39  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  36.62 
 
 
220 aa  161  6e-39  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  36.67 
 
 
228 aa  159  3e-38  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  41.87 
 
 
223 aa  152  5e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  39.81 
 
 
224 aa  145  6e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  37.07 
 
 
213 aa  142  6e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  38.66 
 
 
222 aa  130  2.0000000000000002e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  36.62 
 
 
224 aa  127  1.0000000000000001e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  37.77 
 
 
229 aa  127  1.0000000000000001e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  37.23 
 
 
229 aa  126  2.0000000000000002e-28  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  36.36 
 
 
247 aa  122  3e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  40.2 
 
 
227 aa  117  9.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  27.32 
 
 
208 aa  110  1.0000000000000001e-23  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.69 
 
 
201 aa  109  3e-23  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  26.26 
 
 
212 aa  104  9e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  26.9 
 
 
208 aa  101  1e-20  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  28.49 
 
 
211 aa  99.4  4e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  27.55 
 
 
210 aa  96.3  3e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  29.65 
 
 
224 aa  94  2e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  28.81 
 
 
235 aa  89.7  3e-17  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  26.55 
 
 
283 aa  87  2e-16  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  24.63 
 
 
212 aa  84.3  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  29.17 
 
 
229 aa  75.5  0.0000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.04 
 
 
233 aa  75.1  0.0000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.04 
 
 
233 aa  75.1  0.0000000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.57 
 
 
241 aa  74.7  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  27.07 
 
 
232 aa  72  0.000000000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.73 
 
 
224 aa  72.4  0.000000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  29.94 
 
 
221 aa  72  0.000000000007  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  28.24 
 
 
232 aa  72  0.000000000007  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  27.51 
 
 
230 aa  72  0.000000000008  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  32.65 
 
 
251 aa  71.6  0.000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  28.43 
 
 
224 aa  71.2  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  28.43 
 
 
224 aa  71.2  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  28.43 
 
 
224 aa  71.2  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  27.14 
 
 
233 aa  71.2  0.00000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.26 
 
 
223 aa  70.5  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.5 
 
 
227 aa  70.9  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.27 
 
 
228 aa  70.9  0.00000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.96 
 
 
231 aa  70.5  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.43 
 
 
224 aa  70.1  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.43 
 
 
224 aa  70.1  0.00000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  27.83 
 
 
243 aa  69.3  0.00000000004  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  27.92 
 
 
224 aa  69.3  0.00000000005  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_009523  RoseRS_4027  cyclic nucleotide-binding protein  28.57 
 
 
216 aa  68.9  0.00000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.357709  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28 
 
 
225 aa  68.9  0.00000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  28.72 
 
 
224 aa  68.6  0.00000000008  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.44 
 
 
229 aa  68.6  0.00000000008  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  26.55 
 
 
224 aa  68.6  0.00000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  24.22 
 
 
201 aa  68.2  0.0000000001  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.93 
 
 
228 aa  67.8  0.0000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  28.17 
 
 
227 aa  68.2  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.85 
 
 
248 aa  67.4  0.0000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28 
 
 
225 aa  67  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  30 
 
 
225 aa  67.4  0.0000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  27.15 
 
 
236 aa  67.4  0.0000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  27.27 
 
 
222 aa  66.6  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.29 
 
 
226 aa  66.6  0.0000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  26.44 
 
 
234 aa  66.2  0.0000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  28.43 
 
 
224 aa  66.6  0.0000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.53 
 
 
225 aa  66.6  0.0000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.31 
 
 
224 aa  66.2  0.0000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  28.02 
 
 
234 aa  66.2  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.39 
 
 
222 aa  65.9  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  28.72 
 
 
218 aa  65.5  0.0000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.39 
 
 
225 aa  65.5  0.0000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.58 
 
 
236 aa  65.5  0.0000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.98 
 
 
228 aa  65.5  0.0000000007  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  25.97 
 
 
232 aa  65.5  0.0000000007  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.24 
 
 
229 aa  65.1  0.0000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  64.7  0.000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  24.62 
 
 
243 aa  64.7  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  28.19 
 
 
227 aa  64.3  0.000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  64.7  0.000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.5 
 
 
228 aa  64.7  0.000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  24.64 
 
 
254 aa  64.3  0.000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  27.5 
 
 
225 aa  63.5  0.000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.19 
 
 
227 aa  63.5  0.000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  28.9 
 
 
227 aa  63.5  0.000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  28.5 
 
 
229 aa  63.5  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  26.83 
 
 
220 aa  63.9  0.000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  26.5 
 
 
224 aa  63.5  0.000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27 
 
 
226 aa  63.5  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  25.7 
 
 
236 aa  63.5  0.000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  27.31 
 
 
224 aa  63.5  0.000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  25.37 
 
 
224 aa  63.5  0.000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.96 
 
 
236 aa  63.2  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  22.6 
 
 
233 aa  62.8  0.000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
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