| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2521 |
|---|
| Symbol | |
|---|
| ID | 5713418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2682892 |
|---|
| End bp | 2683569 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641268444 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001533855 |
|---|
| Protein GI | 159045061 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0399516 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGT CATGGATCGC CAAGTTCAAG GGGCTGAGCC GTCTGCCCGC CGACATACAA
GCAGAGCTCG AAGACGGCAG CCAGATCGTA TCGGTCCCTG CGGGGACACA GATCTTCGCC
CCCGGTCAGA CGGCCGATAA CCTGCTTCTG CTGCTCGACG GCACCGTCAA GGTGCAGCAG
AAATCCGAAA CCGGGCGGGA GGTGTTCCTC TACCGGGTGC ATGCCGGGGA AAGCTGCGTT
CTGACCACCG CCTGCATGCT GGCATTCGAG GATTACTCGG CCGAAGGCAC TGCGGAAACA
GCGGTGAAGG CCGTCGCCAT TCCCCGCAAG ATGTTTGACG ATCTCGTTGC GAAGTCTCCG
GTGTTCCGCG AGTTTGTCTT TACGGCCTAT TCGCGCCGGA TCACCGATCT TTTCACCTTG
ATCGACGATA TCGTGTTCCA ACGTATGGAC GTGCGCCTGG CGTCGCGGTT GCTGGAACTC
GCGGATCGCA GCGACGTGGT GCATGCCACA CATGCCGTCC TCGGCACCGA GCTTGGAACC
GCGCGCGAGG TCATCTCGCG GACCCTGTCG GAATTCCAGC GCCGAGGCTG GATCGAGCAG
TCGCGGGGCG AGGTGCGTAT CGTCGGCCGG GAAGGTCTCG AACGGCTGGT GAAATCCTCC
GGCGCCCACG GCTCATAG
|
|---|
| Protein sequence | MDASWIAKFK GLSRLPADIQ AELEDGSQIV SVPAGTQIFA PGQTADNLLL LLDGTVKVQQ
KSETGREVFL YRVHAGESCV LTTACMLAFE DYSAEGTAET AVKAVAIPRK MFDDLVAKSP
VFREFVFTAY SRRITDLFTL IDDIVFQRMD VRLASRLLEL ADRSDVVHAT HAVLGTELGT
AREVISRTLS EFQRRGWIEQ SRGEVRIVGR EGLERLVKSS GAHGS
|
|---|
| |