More than 300 homologs were found in PanDaTox collection
for query gene RPD_1260 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  100 
 
 
230 aa  458  9.999999999999999e-129  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  91.96 
 
 
224 aa  374  1e-103  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  77.68 
 
 
224 aa  331  5e-90  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  81.43 
 
 
223 aa  327  8e-89  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  47.39 
 
 
216 aa  182  4.0000000000000006e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  42.59 
 
 
231 aa  178  4.999999999999999e-44  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  42.86 
 
 
225 aa  178  5.999999999999999e-44  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  42.59 
 
 
220 aa  178  5.999999999999999e-44  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  42.92 
 
 
223 aa  178  8e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  41.94 
 
 
224 aa  176  4e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  41.2 
 
 
221 aa  175  5e-43  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  44.28 
 
 
222 aa  170  1e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  45.33 
 
 
228 aa  167  2e-40  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  42.79 
 
 
240 aa  158  6e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  38.79 
 
 
220 aa  149  3e-35  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  41.97 
 
 
229 aa  147  2.0000000000000003e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  41.9 
 
 
213 aa  147  2.0000000000000003e-34  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  44.74 
 
 
218 aa  143  3e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  44.74 
 
 
218 aa  143  3e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  36.92 
 
 
224 aa  139  3e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  39.13 
 
 
229 aa  130  1.0000000000000001e-29  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  41.74 
 
 
247 aa  130  2.0000000000000002e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  37.62 
 
 
222 aa  127  1.0000000000000001e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  32.07 
 
 
224 aa  112  7.000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  27.27 
 
 
235 aa  108  7.000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  28.42 
 
 
208 aa  103  2e-21  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  31.25 
 
 
211 aa  103  3e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  29.05 
 
 
208 aa  102  3e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  32.11 
 
 
227 aa  102  4e-21  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  28.12 
 
 
201 aa  102  5e-21  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  32.02 
 
 
283 aa  97.8  1e-19  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  29.71 
 
 
212 aa  97.4  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  29.75 
 
 
210 aa  88.2  1e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  27.54 
 
 
212 aa  84.3  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  26.24 
 
 
201 aa  82.4  0.000000000000005  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  31.18 
 
 
221 aa  80.5  0.00000000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.56 
 
 
234 aa  79.3  0.00000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  29.52 
 
 
224 aa  78.2  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.46 
 
 
241 aa  73.9  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  26.87 
 
 
243 aa  74.3  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.03 
 
 
225 aa  72.8  0.000000000005  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  28.3 
 
 
228 aa  71.6  0.000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  26.58 
 
 
249 aa  71.2  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.77 
 
 
222 aa  71.2  0.00000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  32.02 
 
 
227 aa  70.9  0.00000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  22.87 
 
 
267 aa  70.9  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  31.58 
 
 
251 aa  69.3  0.00000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.53 
 
 
224 aa  69.3  0.00000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28.04 
 
 
226 aa  69.3  0.00000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.92 
 
 
225 aa  68.9  0.00000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  25.85 
 
 
224 aa  68.9  0.00000000006  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  30.4 
 
 
235 aa  68.9  0.00000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  21.78 
 
 
225 aa  68.9  0.00000000006  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  29 
 
 
224 aa  68.6  0.00000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.88 
 
 
226 aa  68.6  0.00000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  28.72 
 
 
233 aa  67.8  0.0000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  28.72 
 
 
233 aa  67.8  0.0000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.92 
 
 
225 aa  67  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  28.26 
 
 
235 aa  67.4  0.0000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.87 
 
 
225 aa  67  0.0000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  28.26 
 
 
226 aa  66.6  0.0000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  26.96 
 
 
218 aa  66.2  0.0000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  27.01 
 
 
226 aa  66.2  0.0000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  26.34 
 
 
233 aa  66.2  0.0000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.47 
 
 
226 aa  65.9  0.0000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  27.46 
 
 
228 aa  65.5  0.0000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  28.19 
 
 
235 aa  65.5  0.0000000007  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  31.22 
 
 
235 aa  65.1  0.0000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  24.31 
 
 
220 aa  65.1  0.0000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  25.23 
 
 
223 aa  64.3  0.000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  26.96 
 
 
228 aa  64.3  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  26.36 
 
 
229 aa  64.3  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  23.45 
 
 
226 aa  64.7  0.000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  24.14 
 
 
235 aa  65.1  0.000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  25.34 
 
 
228 aa  64.3  0.000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.03 
 
 
228 aa  63.9  0.000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25 
 
 
230 aa  63.9  0.000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.96 
 
 
226 aa  63.9  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  32.4 
 
 
230 aa  63.5  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  24.2 
 
 
239 aa  64.3  0.000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  22.44 
 
 
222 aa  63.9  0.000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  25.71 
 
 
223 aa  63.5  0.000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  27.23 
 
 
240 aa  63.5  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  30.05 
 
 
231 aa  63.2  0.000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  30.86 
 
 
224 aa  63.5  0.000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  27.35 
 
 
236 aa  63.2  0.000000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  25 
 
 
236 aa  62.8  0.000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  31.01 
 
 
285 aa  62.4  0.000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  26.67 
 
 
219 aa  62.4  0.000000006  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  21.9 
 
 
227 aa  62  0.000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  26.24 
 
 
222 aa  62  0.000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  26.87 
 
 
235 aa  62  0.000000008  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  22.33 
 
 
225 aa  61.6  0.000000009  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  28.29 
 
 
254 aa  61.2  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.44 
 
 
225 aa  60.8  0.00000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  26.42 
 
 
228 aa  61.6  0.00000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25 
 
 
229 aa  61.6  0.00000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  29.07 
 
 
235 aa  60.5  0.00000002  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  27.42 
 
 
266 aa  60.5  0.00000002  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  22.93 
 
 
222 aa  60.8  0.00000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
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