More than 300 homologs were found in PanDaTox collection
for query gene RPB_1158 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  100 
 
 
224 aa  448  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  91.96 
 
 
230 aa  392  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  83.33 
 
 
223 aa  332  3e-90  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  78.12 
 
 
224 aa  330  1e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  44.17 
 
 
225 aa  183  2.0000000000000003e-45  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  47.39 
 
 
216 aa  182  4.0000000000000006e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  43.06 
 
 
220 aa  181  5.0000000000000004e-45  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  43.06 
 
 
231 aa  181  6e-45  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  43.26 
 
 
223 aa  178  5.999999999999999e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  42.59 
 
 
224 aa  176  2e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  42.6 
 
 
221 aa  174  9e-43  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  44.28 
 
 
222 aa  169  3e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  43.44 
 
 
228 aa  163  2.0000000000000002e-39  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  43.26 
 
 
240 aa  158  6e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  38.32 
 
 
220 aa  151  5.9999999999999996e-36  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  40.95 
 
 
213 aa  145  5e-34  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  45.26 
 
 
218 aa  144  1e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  45.26 
 
 
218 aa  144  1e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  41.97 
 
 
229 aa  143  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  38.14 
 
 
224 aa  143  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  39.13 
 
 
229 aa  133  3e-30  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  38.12 
 
 
222 aa  131  7.999999999999999e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  42.86 
 
 
247 aa  128  6e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  32.78 
 
 
224 aa  113  3e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  28.42 
 
 
208 aa  106  4e-22  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  29.69 
 
 
201 aa  105  5e-22  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  26.19 
 
 
235 aa  105  7e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  33.16 
 
 
227 aa  103  2e-21  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  29.05 
 
 
208 aa  101  8e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  30.11 
 
 
211 aa  99  5e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  31.64 
 
 
283 aa  98.6  7e-20  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  29.14 
 
 
212 aa  96.7  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  30.38 
 
 
210 aa  89.4  4e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  26.83 
 
 
212 aa  85.5  6e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  31.18 
 
 
221 aa  82.4  0.000000000000005  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  26.24 
 
 
201 aa  81.3  0.00000000000001  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.3 
 
 
249 aa  78.2  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  29.33 
 
 
234 aa  75.9  0.0000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  29.25 
 
 
228 aa  74.7  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  27.36 
 
 
243 aa  74.7  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.77 
 
 
222 aa  73.2  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  25.56 
 
 
225 aa  72.8  0.000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  30.69 
 
 
251 aa  72.8  0.000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  23.32 
 
 
267 aa  72.8  0.000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  29.02 
 
 
220 aa  71.2  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  30.24 
 
 
254 aa  70.9  0.00000000001  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.11 
 
 
225 aa  70.5  0.00000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25.58 
 
 
241 aa  69.7  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  27.19 
 
 
226 aa  69.7  0.00000000004  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  26.29 
 
 
233 aa  69.3  0.00000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  29.05 
 
 
226 aa  69.7  0.00000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  26.29 
 
 
233 aa  69.3  0.00000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  31.31 
 
 
231 aa  69.3  0.00000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  29.13 
 
 
224 aa  69.7  0.00000000004  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.89 
 
 
224 aa  68.9  0.00000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  26.19 
 
 
223 aa  68.9  0.00000000006  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  25.43 
 
 
235 aa  67  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  29.8 
 
 
254 aa  66.2  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  31.84 
 
 
227 aa  66.6  0.0000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  29.8 
 
 
254 aa  66.6  0.0000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  25.86 
 
 
233 aa  65.9  0.0000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  24.88 
 
 
224 aa  66.2  0.0000000004  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  25.49 
 
 
226 aa  66.2  0.0000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.49 
 
 
224 aa  66.2  0.0000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.75 
 
 
225 aa  65.9  0.0000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.75 
 
 
225 aa  65.1  0.0000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  26.53 
 
 
229 aa  65.1  0.0000000009  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3550  cAMP-regulatory protein  28.09 
 
 
217 aa  65.1  0.0000000009  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  27.45 
 
 
218 aa  65.1  0.0000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.54 
 
 
226 aa  64.3  0.000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  27.1 
 
 
226 aa  64.7  0.000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  24.32 
 
 
236 aa  64.3  0.000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  28.25 
 
 
229 aa  64.3  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  27.36 
 
 
228 aa  64.7  0.000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  24.03 
 
 
231 aa  64.3  0.000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  27.7 
 
 
236 aa  64.3  0.000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.96 
 
 
226 aa  63.9  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.44 
 
 
224 aa  64.3  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.91 
 
 
228 aa  63.9  0.000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  22.45 
 
 
218 aa  63.5  0.000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  24.48 
 
 
230 aa  63.5  0.000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  28.49 
 
 
219 aa  63.2  0.000000003  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  24.77 
 
 
223 aa  63.2  0.000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  22.86 
 
 
232 aa  62.8  0.000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  23.28 
 
 
232 aa  62.8  0.000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  24.32 
 
 
228 aa  62.8  0.000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  25.96 
 
 
224 aa  62.4  0.000000005  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  27.91 
 
 
212 aa  62.8  0.000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  25.98 
 
 
228 aa  62  0.000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011901  Tgr7_2797  cAMP-regulatory protein  29.65 
 
 
198 aa  62.4  0.000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.207531  n/a   
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  29.26 
 
 
235 aa  62.4  0.000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  21.95 
 
 
222 aa  62.4  0.000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  26.11 
 
 
222 aa  62  0.000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.26 
 
 
229 aa  62  0.000000008  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  24.75 
 
 
285 aa  60.8  0.00000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  24.77 
 
 
227 aa  61.6  0.00000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  24.78 
 
 
236 aa  61.2  0.00000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  20.48 
 
 
227 aa  60.8  0.00000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  21.95 
 
 
228 aa  61.2  0.00000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  26.7 
 
 
229 aa  61.2  0.00000001  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
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