| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3129 |
|---|
| Symbol | |
|---|
| ID | 7974339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3288853 |
|---|
| End bp | 3289527 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793714 |
|---|
| Product | transcriptional regulator, Crp/Fnr family |
|---|
| Protein accession | YP_002945014 |
|---|
| Protein GI | 239816104 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0256895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCA ATCCATGGTT CACCAGCATG CCGCGCGCGC AGCGCGAAGC ACTGCTGGGC
GCGGGCGAAC TCATCCACGT GCGGCGCGGC GCCATGGTGT TCCGCCAGGG CGATCCGATC
CATGCGGCGG GCGGCGGCTT CTATGGCCTC CTGGCCGGCA CGATCAAGGT CTCTTCGCTG
CGGCAGGACG GGCGCGAGGC CATTCTTGCG GTGCTCGAGC CCGGCAACTG GTTCGGCGAG
ATCACGCTGA TCGACGGCTC GCCGCGCACC CACGACGCCA CCGCGCTGGA GGCGCTCGAC
CTGCTCGTGG TGCCGCCCGA GGCCTTTGCC CAGCAGATGC GCGACGTGGT CTTTGCCAAT
GCGATGGCCG CCATGCTGGC CGCGCGCGTG CGCATGCTCT ACGGCCTCAC CGAAGACGCC
ACGCTGCGCA GCCTGCGTGC GCGCGTGGCG CACCGGCTGC TGGTGCTGGC GCGCGGCGAC
GCCACGCAGT CGGTGCAGCT GCGCCGCACG CTGATGCTGC CGCAGGAGGC GCTGGCGATG
ATGCTCGGCG TCACGCGCCA GACGCTTTCG AAGGAGCTCA ATGCGCTGGC GGGCGAGGGC
GTGCTCGCGC TGGGCTACGG GCGCATCGAG CTCAGGTCGA TCGATGCGCT GCAGGCGCTG
GCGAGCACCG GATAG
|
|---|
| Protein sequence | MERNPWFTSM PRAQREALLG AGELIHVRRG AMVFRQGDPI HAAGGGFYGL LAGTIKVSSL
RQDGREAILA VLEPGNWFGE ITLIDGSPRT HDATALEALD LLVVPPEAFA QQMRDVVFAN
AMAAMLAARV RMLYGLTEDA TLRSLRARVA HRLLVLARGD ATQSVQLRRT LMLPQEALAM
MLGVTRQTLS KELNALAGEG VLALGYGRIE LRSIDALQAL ASTG
|
|---|
| |