More than 300 homologs were found in PanDaTox collection
for query gene Rru_A1245 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  100 
 
 
216 aa  427  1e-119  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  52.61 
 
 
223 aa  218  7.999999999999999e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  51.18 
 
 
231 aa  196  2.0000000000000003e-49  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  51.18 
 
 
220 aa  196  3e-49  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  51.4 
 
 
224 aa  195  5.000000000000001e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  55.43 
 
 
221 aa  182  3e-45  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  48.02 
 
 
230 aa  179  4e-44  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  45.92 
 
 
225 aa  177  9e-44  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  43.27 
 
 
228 aa  171  6.999999999999999e-42  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  41.75 
 
 
222 aa  170  1e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  48.02 
 
 
224 aa  169  2e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  47.09 
 
 
218 aa  169  4e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  47.09 
 
 
218 aa  169  4e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  46.07 
 
 
240 aa  166  2e-40  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  43.6 
 
 
224 aa  164  1.0000000000000001e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  44.28 
 
 
223 aa  163  2.0000000000000002e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  41.88 
 
 
220 aa  161  8.000000000000001e-39  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  46.89 
 
 
213 aa  157  9e-38  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  47.34 
 
 
247 aa  151  7e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  43.14 
 
 
222 aa  150  2e-35  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  39.42 
 
 
229 aa  147  9e-35  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  40.65 
 
 
229 aa  147  2.0000000000000003e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  36.89 
 
 
224 aa  130  1.0000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  39.58 
 
 
227 aa  126  2.0000000000000002e-28  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  29.86 
 
 
224 aa  118  7.999999999999999e-26  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.89 
 
 
201 aa  116  1.9999999999999998e-25  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  30.99 
 
 
235 aa  115  3.9999999999999997e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  30.77 
 
 
208 aa  114  1.0000000000000001e-24  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  32.18 
 
 
208 aa  112  3e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  32.95 
 
 
212 aa  111  7.000000000000001e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  32.8 
 
 
211 aa  110  1.0000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  33.14 
 
 
210 aa  110  2.0000000000000002e-23  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  32.95 
 
 
283 aa  106  3e-22  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  30.73 
 
 
212 aa  92.8  3e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  34.8 
 
 
231 aa  89.4  4e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  25.3 
 
 
201 aa  87.8  1e-16  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  31.35 
 
 
251 aa  84  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  31.08 
 
 
222 aa  80.5  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  26.61 
 
 
234 aa  73.2  0.000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  27.73 
 
 
239 aa  73.2  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  27.85 
 
 
231 aa  72.8  0.000000000004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  28.77 
 
 
223 aa  72.4  0.000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  26.7 
 
 
240 aa  71.6  0.000000000008  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  29.7 
 
 
222 aa  71.6  0.000000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  26.82 
 
 
236 aa  70.9  0.00000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  24.77 
 
 
225 aa  70.5  0.00000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2132  Crp/FNR family transcriptional regulator  25.26 
 
 
231 aa  70.5  0.00000000002  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00647195  normal  0.364317 
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  24.23 
 
 
218 aa  69.7  0.00000000004  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  25.45 
 
 
236 aa  68.9  0.00000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.11 
 
 
227 aa  68.6  0.00000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.46 
 
 
236 aa  68.2  0.00000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  31.55 
 
 
218 aa  68.2  0.00000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.3 
 
 
234 aa  67.4  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  27.55 
 
 
224 aa  66.2  0.0000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  27.41 
 
 
221 aa  65.9  0.0000000005  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  30.14 
 
 
224 aa  65.5  0.0000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.91 
 
 
243 aa  65.1  0.0000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  26.51 
 
 
233 aa  65.1  0.0000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  26.51 
 
 
233 aa  65.1  0.0000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  26.64 
 
 
229 aa  64.7  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  28 
 
 
224 aa  63.9  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  24.42 
 
 
232 aa  63.5  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.33 
 
 
229 aa  64.3  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  29.14 
 
 
229 aa  63.9  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  30.22 
 
 
238 aa  63.5  0.000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.28 
 
 
226 aa  63.5  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.91 
 
 
225 aa  63.2  0.000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.46 
 
 
225 aa  62.4  0.000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  25.91 
 
 
224 aa  62  0.000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.49 
 
 
234 aa  62  0.000000007  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  29.36 
 
 
218 aa  61.6  0.000000008  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_007948  Bpro_2580  Crp/FNR family transcriptional regulator  27.22 
 
 
231 aa  61.6  0.000000008  Polaromonas sp. JS666  Bacteria  normal  normal  0.117752 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  26.77 
 
 
225 aa  61.6  0.000000009  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  27.78 
 
 
254 aa  60.8  0.00000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  25.58 
 
 
233 aa  59.7  0.00000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  24.77 
 
 
226 aa  59.7  0.00000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.27 
 
 
226 aa  59.3  0.00000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.21 
 
 
242 aa  58.9  0.00000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.15 
 
 
248 aa  58.5  0.00000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  24.61 
 
 
229 aa  58.9  0.00000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.19 
 
 
227 aa  58.5  0.00000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.11 
 
 
227 aa  58.2  0.00000009  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.27 
 
 
228 aa  57  0.0000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  24.88 
 
 
225 aa  57  0.0000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.6 
 
 
227 aa  57.4  0.0000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  26.7 
 
 
226 aa  57.4  0.0000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  25.94 
 
 
227 aa  57  0.0000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  24.41 
 
 
226 aa  57  0.0000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.4 
 
 
228 aa  56.2  0.0000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  27.55 
 
 
226 aa  56.6  0.0000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  24.32 
 
 
232 aa  56.6  0.0000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  24.19 
 
 
267 aa  56.6  0.0000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  26.04 
 
 
350 aa  56.2  0.0000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  28.14 
 
 
225 aa  56.2  0.0000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  20.92 
 
 
226 aa  56.2  0.0000004  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  25.89 
 
 
222 aa  56.2  0.0000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  26.42 
 
 
225 aa  55.8  0.0000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_012039  Cla_0689  conserved hypothetical protein, putative transcriptional regulator  19.8 
 
 
200 aa  55.8  0.0000005  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.32 
 
 
227 aa  55.5  0.0000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  22.64 
 
 
224 aa  55.5  0.0000006  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>