More than 300 homologs were found in PanDaTox collection
for query gene Caci_4993 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_4993  extracellular solute-binding protein family 1  100 
 
 
432 aa  872    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0450999  normal  0.012477 
 
 
-
 
NC_013093  Amir_2832  extracellular solute-binding protein family 1  61.2 
 
 
417 aa  494  9.999999999999999e-139  Actinosynnema mirum DSM 43827  Bacteria  normal  0.617934  n/a   
 
 
-
 
NC_013595  Sros_3842  extracellular solute-binding protein family 1  55.01 
 
 
429 aa  436  1e-121  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0316121  normal  0.0422385 
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  35.05 
 
 
415 aa  237  2e-61  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  32.78 
 
 
414 aa  231  2e-59  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  32.82 
 
 
421 aa  215  9.999999999999999e-55  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_012850  Rleg_3910  extracellular solute-binding protein family 1  29.86 
 
 
412 aa  203  4e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.198843 
 
 
-
 
NC_011369  Rleg2_3622  extracellular solute-binding protein family 1  30.09 
 
 
412 aa  201  3e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4147  extracellular solute-binding protein family 1  32.61 
 
 
441 aa  189  5.999999999999999e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.892231  normal 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  29.69 
 
 
423 aa  126  9e-28  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  25.65 
 
 
429 aa  107  4e-22  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  26.35 
 
 
457 aa  104  2e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  27.94 
 
 
430 aa  103  5e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  27.6 
 
 
456 aa  98.2  2e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  27.56 
 
 
428 aa  92  2e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  26.92 
 
 
431 aa  92  2e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013093  Amir_4241  extracellular solute-binding protein family 1  27.38 
 
 
422 aa  90.5  5e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  27.17 
 
 
424 aa  89.7  8e-17  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  25.06 
 
 
414 aa  89  1e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  27.62 
 
 
435 aa  89  1e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_013595  Sros_5872  ABC-type sugar transport system periplasmic component-like protein  26.3 
 
 
460 aa  88.2  2e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.696543 
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  26.33 
 
 
426 aa  88.6  2e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4320  extracellular solute-binding protein family 1  28.3 
 
 
425 aa  87  6e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.811375  hitchhiker  0.00841489 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  26.43 
 
 
461 aa  86.7  9e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_012669  Bcav_2274  extracellular solute-binding protein family 1  27.85 
 
 
428 aa  85.9  0.000000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.837023  normal 
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  26.43 
 
 
445 aa  85.9  0.000000000000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  24.29 
 
 
426 aa  85.1  0.000000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  29.13 
 
 
435 aa  84  0.000000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0592  extracellular solute-binding protein  22.83 
 
 
456 aa  83.2  0.000000000000008  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000165278  n/a   
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  29.24 
 
 
441 aa  83.2  0.000000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  25.34 
 
 
410 aa  82.8  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_013526  Tter_2526  extracellular solute-binding protein family 1  25.82 
 
 
520 aa  82  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000430481  n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  25.22 
 
 
414 aa  81.3  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  25.07 
 
 
410 aa  81.3  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_013739  Cwoe_5802  extracellular solute-binding protein family 1  25.93 
 
 
444 aa  81.6  0.00000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0809589 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  25.91 
 
 
420 aa  80.9  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_009921  Franean1_1895  extracellular solute-binding protein  25.07 
 
 
445 aa  80.9  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.854658  normal 
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  26.72 
 
 
433 aa  80.5  0.00000000000005  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.44 
 
 
458 aa  80.1  0.00000000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.44 
 
 
458 aa  80.5  0.00000000000006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7725  ABC-type sugar transport system periplasmic component-like protein  24.5 
 
 
420 aa  80.5  0.00000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  25.5 
 
 
426 aa  80.1  0.00000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.39 
 
 
458 aa  79.3  0.0000000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  23.71 
 
 
460 aa  79.3  0.0000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.22 
 
 
458 aa  79  0.0000000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_8464  extracellular solute-binding protein family 1  29.5 
 
 
481 aa  79.3  0.0000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.635867  normal  0.0842744 
 
 
-
 
NC_013530  Xcel_0063  extracellular solute-binding protein family 1  29.11 
 
 
475 aa  79.3  0.0000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.22 
 
 
458 aa  79  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.22 
 
 
458 aa  79  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.22 
 
 
458 aa  79  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  28.69 
 
 
419 aa  78.6  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_009620  Smed_4557  extracellular solute-binding protein  27.07 
 
 
412 aa  78.2  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.302395  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.99 
 
 
458 aa  78.6  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3703  extracellular solute-binding protein family 1  29.57 
 
 
466 aa  79  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0104923  normal 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  26.89 
 
 
419 aa  78.2  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_009380  Strop_0803  extracellular solute-binding protein  26.5 
 
 
433 aa  78.2  0.0000000000003  Salinispora tropica CNB-440  Bacteria  normal  0.437157  normal 
 
 
-
 
NC_013521  Sked_02930  carbohydrate-binding protein  23.61 
 
 
426 aa  78.2  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  23.2 
 
 
454 aa  77.4  0.0000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  26.27 
 
 
407 aa  77.4  0.0000000000004  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  23.77 
 
 
458 aa  77.4  0.0000000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0482  extracellular solute-binding protein  27.52 
 
 
443 aa  77  0.0000000000006  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00268905  n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  26.98 
 
 
432 aa  77  0.0000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  25.51 
 
 
423 aa  76.6  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_013595  Sros_5738  ABC-type sugar transport system periplasmic component-like protein  26.47 
 
 
452 aa  76.3  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.599702  normal  0.0824986 
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  23.89 
 
 
447 aa  76.3  0.000000000001  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  26.23 
 
 
420 aa  76.3  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_009636  Smed_2315  extracellular solute-binding protein  28.04 
 
 
455 aa  75.9  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  24.07 
 
 
415 aa  75.5  0.000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  23.43 
 
 
427 aa  75.5  0.000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4984  extracellular solute-binding protein family 1  26.56 
 
 
432 aa  75.1  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000108283  decreased coverage  0.000897425 
 
 
-
 
NC_010571  Oter_4148  extracellular solute-binding protein  22.63 
 
 
426 aa  74.7  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.0472509  normal  0.106363 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  22.79 
 
 
466 aa  74.3  0.000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_2252  extracellular solute-binding protein  24.03 
 
 
469 aa  74.3  0.000000000004  Frankia sp. CcI3  Bacteria  hitchhiker  0.00844632  hitchhiker  0.0063434 
 
 
-
 
NC_013595  Sros_1626  putative sugar ABC transporter, periplasmic sugar-binding protein  25.24 
 
 
418 aa  74.3  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.188232 
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  24.84 
 
 
436 aa  73.9  0.000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_011886  Achl_2094  extracellular solute-binding protein family 1  30.61 
 
 
441 aa  73.9  0.000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000152964 
 
 
-
 
NC_014165  Tbis_0870  extracellular solute-binding protein family 1  25.55 
 
 
419 aa  73.9  0.000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.649209  normal  0.121264 
 
 
-
 
NC_010483  TRQ2_0970  extracellular solute-binding protein  26.85 
 
 
411 aa  73.6  0.000000000006  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000309876  n/a   
 
 
-
 
NC_009486  Tpet_0954  extracellular solute-binding protein  26.85 
 
 
411 aa  73.9  0.000000000006  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  28.32 
 
 
464 aa  73.6  0.000000000006  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.11 
 
 
422 aa  73.6  0.000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  23.22 
 
 
410 aa  73.2  0.000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  25.72 
 
 
416 aa  73.2  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  25.72 
 
 
416 aa  72.8  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_21150  carbohydrate-binding protein  25.78 
 
 
428 aa  72.8  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.396929  normal  0.174783 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  27.83 
 
 
421 aa  72.4  0.00000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.97 
 
 
458 aa  72  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  25.86 
 
 
411 aa  72  0.00000000002  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_013131  Caci_6904  extracellular solute-binding protein family 1  23.03 
 
 
404 aa  72  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000382644  hitchhiker  0.00751503 
 
 
-
 
NC_008541  Arth_3895  extracellular solute-binding protein  25.39 
 
 
433 aa  71.2  0.00000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  25.46 
 
 
424 aa  71.6  0.00000000003  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_010003  Pmob_1262  extracellular solute-binding protein  24.44 
 
 
408 aa  71.6  0.00000000003  Petrotoga mobilis SJ95  Bacteria  normal  0.953049  n/a   
 
 
-
 
NC_010320  Teth514_1181  extracellular solute-binding protein  26.15 
 
 
413 aa  71.2  0.00000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000595288  n/a   
 
 
-
 
NC_013093  Amir_0446  extracellular solute-binding protein family 1  25.09 
 
 
424 aa  71.2  0.00000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.900099  n/a   
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  23.49 
 
 
445 aa  70.9  0.00000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_009380  Strop_1187  extracellular solute-binding protein  26.54 
 
 
426 aa  70.9  0.00000000004  Salinispora tropica CNB-440  Bacteria  normal  0.118326  normal 
 
 
-
 
NC_007777  Francci3_2834  extracellular solute-binding protein  27.48 
 
 
459 aa  70.5  0.00000000005  Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_011369  Rleg2_3121  extracellular solute-binding protein family 1  26.06 
 
 
412 aa  70.9  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1080  extracellular solute-binding protein  28.12 
 
 
426 aa  70.9  0.00000000005  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00103993 
 
 
-
 
NC_008148  Rxyl_0669  extracellular solute-binding protein  24.69 
 
 
439 aa  70.1  0.00000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0601778  n/a   
 
 
-
 
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