Gene Caci_4993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4993 
Symbol 
ID8336347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5712720 
End bp5714018 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content69% 
IMG OID644958092 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003115694 
Protein GI256394130 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0450999 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.012477 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACTC ATCTGCCTCG CCCACGCCGT GCGGTCCTGA CCGCCGCGGT GGCGGTAGCC 
GCCCTCGTCC TGGCCGGCTG CGGCTCCACC AAGAGCTCCG GCGGTTCGGC CGGTGCCACC
GGCTCGGCCG ACGACGGCAC CACCCTCACC CTGTGGACCC GCGCCGGCAC GCAAACCCAG
ACCCAGGCGC TCGTGGACGC GTACAACGCG AGCCACAAGA ACAAGGTCAA GCTGACCGCT
TTCCCGAACG AGCAGTACCC TGACAAGATC GCCACGTCGG CCGGCGCCAA GGCGCTGCCG
GACATCTTCA CCTCCGACGT GGTGTTCGCG CCGAACTACG TCAGCCAGGG TCTGTGGACC
GATATCACCG GCGACTTCAA CACCCTGCCG TTCAAGGACG CGGTGGCTCC CTCGCACGTC
AAGGCCGCCA CCTCCGACGG CAAGATCTAC GCTGTCCCGC ACGCGCTGGA CCTGTCGGTC
ATGTTCTACA ACAAGGCCTT GTACAAGCAG GCCGGGCTGG ACCCGAACAA GGGCCCTGCC
ACGCTCCAGG AGTTCGCCGA CCAGGCGCGC GCCGTCGCCA AGCTCGGCGG CGGCAACCAC
GGCACGTACA TCGGCGGCAA CTGCGGCGGT TGCGTGGAGT TCACGTTCTG GCCCTCGATC
TGGGCCGACG GCGGCGCGGT GATGGACGAC GCGGGTACCA AGTCCTCGAT CGACAGCTCC
CAGGTGCAGG CCGTGTTCAA GGTCTACCAC GACCTGTACG CCGACGGGAC CGCCGACCCG
GCCTCCAAGC AGGAGAACGG CACCACCTGG CTCGGCGCGC TGCAGACCGG CAAGGTCGGC
ATCGCGCCCG GACCCTCGTC CTGGCTGCCG CTGATCCGCT CCAAGGGCAT CGACGTCGGC
GTGGCGCCGA TCCCCGGCGT GCGGGGCGGG AGCTCCACCT TCGTCGGCGG CGACGTGGCC
GGCATCGCCT CGACCAGCTC GCACGAGAAG CAGGCCTGGG ACTTCCTGTC CTGGACCCTC
GGCGACACCG CGCAGGTCGA CGTGGTGGCC AAGCAGGGCC AGATCATCGC CCGCACCGAC
CTGGCGGACA ACCGGTACGC CGCCGCCGAC CCGGCGGTGC TGAGCATCAA CCAGGTCATG
GCCAAGGGCA AGACGCCGTA CGCGCTGAAC TTCAACGCCA CCTACAACGA CCCGCAGAGC
CCGTGGACGG CGGCGCTGCG CGGAGCCCTG TTCGGGGACG CGGCCAGTGC TCTGGCCTCC
GGTCAGGACG CCATCACCAA ATCGCTCGAC CAGCACTGA
 
Protein sequence
MPTHLPRPRR AVLTAAVAVA ALVLAGCGST KSSGGSAGAT GSADDGTTLT LWTRAGTQTQ 
TQALVDAYNA SHKNKVKLTA FPNEQYPDKI ATSAGAKALP DIFTSDVVFA PNYVSQGLWT
DITGDFNTLP FKDAVAPSHV KAATSDGKIY AVPHALDLSV MFYNKALYKQ AGLDPNKGPA
TLQEFADQAR AVAKLGGGNH GTYIGGNCGG CVEFTFWPSI WADGGAVMDD AGTKSSIDSS
QVQAVFKVYH DLYADGTADP ASKQENGTTW LGALQTGKVG IAPGPSSWLP LIRSKGIDVG
VAPIPGVRGG SSTFVGGDVA GIASTSSHEK QAWDFLSWTL GDTAQVDVVA KQGQIIARTD
LADNRYAAAD PAVLSINQVM AKGKTPYALN FNATYNDPQS PWTAALRGAL FGDAASALAS
GQDAITKSLD QH