More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3643 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  100 
 
 
221 aa  449  1e-125  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  51.61 
 
 
225 aa  227  1e-58  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  51.13 
 
 
224 aa  220  9.999999999999999e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  45.83 
 
 
220 aa  187  1e-46  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  45.83 
 
 
231 aa  187  1e-46  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  42.79 
 
 
223 aa  186  3e-46  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  55.43 
 
 
216 aa  182  3e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  41.26 
 
 
230 aa  169  3e-41  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  37.88 
 
 
228 aa  158  8e-38  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  42.72 
 
 
224 aa  151  8e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  36.15 
 
 
222 aa  150  1e-35  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  42.13 
 
 
220 aa  149  4e-35  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  40.29 
 
 
223 aa  148  5e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  41.4 
 
 
224 aa  147  2.0000000000000003e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  37.8 
 
 
218 aa  143  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  35.94 
 
 
240 aa  143  2e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  37.8 
 
 
218 aa  143  2e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  40.33 
 
 
229 aa  139  3e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  36.08 
 
 
213 aa  128  6e-29  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  33.02 
 
 
224 aa  125  4.0000000000000003e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  37.28 
 
 
229 aa  117  1.9999999999999998e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  36.9 
 
 
247 aa  116  1.9999999999999998e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  39.87 
 
 
222 aa  117  1.9999999999999998e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  37.16 
 
 
227 aa  109  3e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  31.19 
 
 
235 aa  109  4.0000000000000004e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  31.35 
 
 
283 aa  107  2e-22  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  25.79 
 
 
208 aa  107  2e-22  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  32.11 
 
 
224 aa  101  1e-20  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  29.84 
 
 
211 aa  99.4  3e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.86 
 
 
201 aa  99  6e-20  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  27.66 
 
 
208 aa  98.2  8e-20  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  27.66 
 
 
210 aa  96.7  3e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  27.84 
 
 
212 aa  96.3  3e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  28.57 
 
 
267 aa  86.3  3e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  31.31 
 
 
228 aa  85.9  5e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  28.26 
 
 
212 aa  83.6  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  27.27 
 
 
224 aa  83.6  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  30 
 
 
223 aa  78.6  0.00000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  24.68 
 
 
201 aa  78.6  0.00000000000007  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  31.18 
 
 
251 aa  75.5  0.0000000000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  27.03 
 
 
228 aa  75.5  0.0000000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.5 
 
 
222 aa  74.7  0.000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  26.47 
 
 
252 aa  74.7  0.000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  23.89 
 
 
229 aa  74.3  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  25.89 
 
 
218 aa  72  0.000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  26.13 
 
 
228 aa  71.6  0.000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  22.64 
 
 
227 aa  70.9  0.00000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  25.87 
 
 
227 aa  71.6  0.00000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  25.89 
 
 
233 aa  71.2  0.00000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  25.89 
 
 
233 aa  71.2  0.00000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  27.55 
 
 
224 aa  70.5  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  24.64 
 
 
231 aa  69.7  0.00000000003  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  25.77 
 
 
212 aa  69.3  0.00000000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  27.03 
 
 
224 aa  69.3  0.00000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  26.9 
 
 
218 aa  69.7  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  27.44 
 
 
234 aa  69.3  0.00000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  25.38 
 
 
233 aa  68.9  0.00000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  25.91 
 
 
226 aa  68.9  0.00000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  26.7 
 
 
221 aa  68.6  0.00000000006  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  28.65 
 
 
228 aa  68.9  0.00000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  24.37 
 
 
223 aa  68.6  0.00000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  25.93 
 
 
222 aa  68.6  0.00000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  29.29 
 
 
234 aa  68.6  0.00000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  26.19 
 
 
243 aa  68.2  0.00000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  23.74 
 
 
223 aa  68.2  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  26.67 
 
 
225 aa  68.2  0.0000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  30.93 
 
 
219 aa  67.8  0.0000000001  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_009253  Dred_3232  cyclic nucleotide-binding protein  23.71 
 
 
212 aa  66.6  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  24.88 
 
 
229 aa  67  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  23.87 
 
 
227 aa  67.4  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  24.37 
 
 
223 aa  67  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  24.87 
 
 
225 aa  67  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  23.19 
 
 
218 aa  67  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  23.35 
 
 
222 aa  66.2  0.0000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  26.4 
 
 
239 aa  66.6  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  28.21 
 
 
240 aa  66.2  0.0000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  22.77 
 
 
232 aa  66.2  0.0000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  24.62 
 
 
221 aa  66.2  0.0000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.75 
 
 
248 aa  66.2  0.0000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  30.54 
 
 
229 aa  65.9  0.0000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  25.89 
 
 
234 aa  66.2  0.0000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  26.11 
 
 
236 aa  65.9  0.0000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  24.37 
 
 
241 aa  65.5  0.0000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.94 
 
 
227 aa  65.5  0.0000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  24.88 
 
 
226 aa  65.5  0.0000000006  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  24.76 
 
 
227 aa  65.1  0.0000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.63 
 
 
231 aa  64.3  0.000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008009  Acid345_1498  Crp/FNR family transcriptional regulator  25.11 
 
 
239 aa  64.7  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163113  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  22.69 
 
 
236 aa  63.9  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2153  transcriptional regulator, Crp/Fnr family  27.81 
 
 
216 aa  64.3  0.000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0015242 
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  24.1 
 
 
225 aa  64.3  0.000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  24.1 
 
 
225 aa  64.3  0.000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26.74 
 
 
222 aa  63.2  0.000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.65 
 
 
224 aa  63.5  0.000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  26.83 
 
 
234 aa  62.8  0.000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009523  RoseRS_4027  cyclic nucleotide-binding protein  25.91 
 
 
216 aa  62.8  0.000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.357709  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  27.59 
 
 
217 aa  62.4  0.000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  27.98 
 
 
226 aa  62.4  0.000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  23.11 
 
 
249 aa  62.4  0.000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.17 
 
 
227 aa  62.4  0.000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
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