More than 300 homologs were found in PanDaTox collection
for query gene Pden_3468 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  100 
 
 
236 aa  473  1e-132  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  33.5 
 
 
251 aa  107  2e-22  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  34.16 
 
 
243 aa  102  6e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  32.06 
 
 
224 aa  99.4  4e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  30.41 
 
 
220 aa  98.2  9e-20  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_010725  Mpop_4711  cyclic nucleotide-binding protein  29.44 
 
 
230 aa  97.1  2e-19  Methylobacterium populi BJ001  Bacteria  normal  0.754309  decreased coverage  0.00295307 
 
 
-
 
NC_012791  Vapar_4417  transcriptional regulator, Crp/Fnr family  30.33 
 
 
258 aa  97.1  2e-19  Variovorax paradoxus S110  Bacteria  normal  0.48784  n/a   
 
 
-
 
NC_010505  Mrad2831_2874  cyclic nucleotide-binding protein  28.5 
 
 
228 aa  95.9  5e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191735 
 
 
-
 
NC_011894  Mnod_6767  cyclic nucleotide-binding protein  29.17 
 
 
228 aa  92.8  4e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.171014  n/a   
 
 
-
 
NC_010511  M446_6568  cyclic nucleotide-binding protein  29.17 
 
 
228 aa  92.4  5e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.538415  normal  0.0410288 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.38 
 
 
220 aa  92  6e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  26.87 
 
 
219 aa  91.7  8e-18  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011666  Msil_3301  cyclic nucleotide-binding protein  30 
 
 
229 aa  91.7  9e-18  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00259627 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  31.89 
 
 
228 aa  91.7  9e-18  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.27 
 
 
230 aa  90.5  2e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0519  Fnr-like transcriptional activator  32.14 
 
 
246 aa  89.7  3e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4566  cyclic nucleotide-binding protein  28.9 
 
 
234 aa  89.4  4e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.940335  normal  0.142026 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  36.31 
 
 
233 aa  89.4  4e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_010172  Mext_4195  cyclic nucleotide-binding  28.9 
 
 
234 aa  89.7  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.164725  normal  0.773983 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  29.95 
 
 
223 aa  89  6e-17  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  28.51 
 
 
240 aa  88.2  9e-17  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  28.71 
 
 
226 aa  88.2  1e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  28.84 
 
 
231 aa  87  2e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  29.81 
 
 
236 aa  87.4  2e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5739  cyclic nucleotide-binding protein  30.09 
 
 
235 aa  87  2e-16  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.172184 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.41 
 
 
224 aa  87.4  2e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  30.54 
 
 
239 aa  86.7  3e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  32.54 
 
 
222 aa  86.7  3e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.88 
 
 
236 aa  86.3  4e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_011666  Msil_3304  transcriptional regulator, Crp/Fnr family  30.33 
 
 
243 aa  85.9  4e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.010506 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.05 
 
 
227 aa  85.9  5e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  31.52 
 
 
214 aa  85.9  5e-16  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.09 
 
 
247 aa  85.5  7e-16  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  27.88 
 
 
257 aa  85.1  8e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  29.09 
 
 
236 aa  85.1  8e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  29.09 
 
 
236 aa  85.1  8e-16  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  32.06 
 
 
219 aa  85.1  9e-16  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.08 
 
 
226 aa  84.7  0.000000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.57 
 
 
228 aa  85.1  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.26 
 
 
236 aa  84.7  0.000000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  30.46 
 
 
225 aa  84.3  0.000000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  32.11 
 
 
239 aa  84  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  26.94 
 
 
226 aa  84  0.000000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  27.14 
 
 
222 aa  84  0.000000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  27.88 
 
 
261 aa  84.3  0.000000000000002  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.38 
 
 
226 aa  83.2  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  27.6 
 
 
227 aa  83.2  0.000000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  28.85 
 
 
237 aa  83.2  0.000000000000003  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  26.73 
 
 
236 aa  82.8  0.000000000000004  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  26.85 
 
 
239 aa  82.8  0.000000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  29 
 
 
227 aa  82.4  0.000000000000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  29.5 
 
 
228 aa  82.4  0.000000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30.41 
 
 
228 aa  82.4  0.000000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  28.5 
 
 
225 aa  82  0.000000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  26.73 
 
 
236 aa  82  0.000000000000007  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  31.71 
 
 
224 aa  81.6  0.00000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.27 
 
 
226 aa  81.3  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.18 
 
 
225 aa  81.3  0.00000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  22.73 
 
 
224 aa  81.3  0.00000000000001  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27 
 
 
226 aa  81.3  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  35.03 
 
 
237 aa  80.5  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.29 
 
 
225 aa  80.5  0.00000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  26.21 
 
 
225 aa  80.5  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.22 
 
 
236 aa  80.9  0.00000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.44 
 
 
228 aa  80.9  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.89 
 
 
225 aa  80.1  0.00000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.87 
 
 
225 aa  80.5  0.00000000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  28.1 
 
 
230 aa  80.1  0.00000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  28.06 
 
 
225 aa  80.1  0.00000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  26.98 
 
 
231 aa  79.7  0.00000000000003  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  30.81 
 
 
228 aa  79.7  0.00000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  25.98 
 
 
236 aa  79.3  0.00000000000004  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  25.98 
 
 
236 aa  79.7  0.00000000000004  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.08 
 
 
242 aa  79.7  0.00000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.35 
 
 
225 aa  79.3  0.00000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.7 
 
 
232 aa  79.7  0.00000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  26.77 
 
 
222 aa  79.7  0.00000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.91 
 
 
229 aa  79.3  0.00000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  27.55 
 
 
232 aa  79  0.00000000000006  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  26 
 
 
225 aa  79  0.00000000000006  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  29.63 
 
 
222 aa  79  0.00000000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.05 
 
 
249 aa  79  0.00000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.21 
 
 
231 aa  78.6  0.00000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.12 
 
 
231 aa  78.6  0.00000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  27.75 
 
 
234 aa  78.6  0.00000000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  22.69 
 
 
229 aa  78.2  0.00000000000009  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  26.77 
 
 
228 aa  77.8  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.79 
 
 
225 aa  77.8  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  28.57 
 
 
226 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  26.82 
 
 
234 aa  77.8  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.31 
 
 
233 aa  77.4  0.0000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  25.79 
 
 
226 aa  77.4  0.0000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.31 
 
 
233 aa  77.4  0.0000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  29.33 
 
 
248 aa  77  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  28.18 
 
 
227 aa  77  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  26.92 
 
 
227 aa  77  0.0000000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  29.74 
 
 
225 aa  76.6  0.0000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  30.69 
 
 
224 aa  76.6  0.0000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.53 
 
 
225 aa  76.3  0.0000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  26.32 
 
 
224 aa  76.3  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
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