More than 300 homologs were found in PanDaTox collection
for query gene Daci_5739 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_5739  cyclic nucleotide-binding protein  100 
 
 
235 aa  466  9.999999999999999e-131  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.172184 
 
 
-
 
NC_012791  Vapar_4417  transcriptional regulator, Crp/Fnr family  58.59 
 
 
258 aa  239  2.9999999999999997e-62  Variovorax paradoxus S110  Bacteria  normal  0.48784  n/a   
 
 
-
 
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  45.5 
 
 
243 aa  178  7e-44  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_3304  transcriptional regulator, Crp/Fnr family  38.25 
 
 
243 aa  143  2e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.010506 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  41.88 
 
 
233 aa  127  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  33.01 
 
 
251 aa  115  6e-25  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011894  Mnod_6767  cyclic nucleotide-binding protein  36.63 
 
 
228 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.171014  n/a   
 
 
-
 
NC_010511  M446_6568  cyclic nucleotide-binding protein  36.14 
 
 
228 aa  112  6e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.538415  normal  0.0410288 
 
 
-
 
NC_011666  Msil_3301  cyclic nucleotide-binding protein  32.57 
 
 
229 aa  111  1.0000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00259627 
 
 
-
 
NC_010505  Mrad2831_2874  cyclic nucleotide-binding protein  36.14 
 
 
228 aa  109  4.0000000000000004e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191735 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  33.49 
 
 
234 aa  105  5e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_010725  Mpop_4711  cyclic nucleotide-binding protein  35.15 
 
 
230 aa  105  7e-22  Methylobacterium populi BJ001  Bacteria  normal  0.754309  decreased coverage  0.00295307 
 
 
-
 
NC_011729  PCC7424_2678  transcriptional regulator, Crp/Fnr family  33.64 
 
 
235 aa  105  7e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  33.95 
 
 
232 aa  104  1e-21  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  30.67 
 
 
232 aa  102  6e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4566  cyclic nucleotide-binding protein  33.82 
 
 
234 aa  102  6e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.940335  normal  0.142026 
 
 
-
 
NC_010172  Mext_4195  cyclic nucleotide-binding  33.82 
 
 
234 aa  102  6e-21  Methylobacterium extorquens PA1  Bacteria  normal  0.164725  normal  0.773983 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  33.5 
 
 
228 aa  100  2e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  32.82 
 
 
226 aa  99  6e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  31.58 
 
 
224 aa  97.1  2e-19  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.65 
 
 
225 aa  97.4  2e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  29.68 
 
 
219 aa  96.3  3e-19  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  32.55 
 
 
230 aa  96.7  3e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  30.28 
 
 
225 aa  95.1  8e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  30.04 
 
 
248 aa  94.7  1e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011884  Cyan7425_1533  transcriptional regulator, Crp/Fnr family  32.51 
 
 
231 aa  94.7  1e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  31.79 
 
 
226 aa  94.7  1e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  32.62 
 
 
228 aa  92.4  5e-18  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1825  cyclic nucleotide-binding protein  33.93 
 
 
269 aa  92.4  5e-18  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  36.02 
 
 
228 aa  92  8e-18  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  33.33 
 
 
234 aa  90.5  2e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30 
 
 
228 aa  90.5  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  30.09 
 
 
236 aa  90.1  3e-17  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  34.81 
 
 
214 aa  89.4  5e-17  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_011726  PCC8801_0890  transcriptional regulator, Crp/Fnr family  29.55 
 
 
235 aa  89  6e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0916  transcriptional regulator, Crp/Fnr family  29.55 
 
 
235 aa  89  6e-17  Cyanothece sp. PCC 8802  Bacteria  normal  0.18169  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.72 
 
 
226 aa  87.8  1e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.89 
 
 
225 aa  87.8  1e-16  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  30.56 
 
 
225 aa  87  3e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  29.72 
 
 
228 aa  86.7  3e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.5 
 
 
226 aa  86.7  3e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.76 
 
 
229 aa  86.3  4e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  27.78 
 
 
224 aa  86.3  4e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.35 
 
 
225 aa  85.9  5e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  27.48 
 
 
229 aa  85.9  5e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  30.27 
 
 
225 aa  84.7  0.000000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  31.13 
 
 
231 aa  84  0.000000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.47 
 
 
226 aa  84.3  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  29.57 
 
 
240 aa  83.6  0.000000000000003  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.94 
 
 
236 aa  83.2  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.62 
 
 
243 aa  82.8  0.000000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.41 
 
 
228 aa  82.4  0.000000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  29.19 
 
 
226 aa  82.4  0.000000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  28.39 
 
 
232 aa  81.6  0.000000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  29.17 
 
 
226 aa  81.3  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.11 
 
 
252 aa  80.9  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  30.65 
 
 
242 aa  80.1  0.00000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  26 
 
 
231 aa  80.9  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.82 
 
 
228 aa  80.9  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.61 
 
 
241 aa  79.7  0.00000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  27.1 
 
 
234 aa  79.7  0.00000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  28.9 
 
 
230 aa  80.1  0.00000000000003  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.36 
 
 
227 aa  79.7  0.00000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2514  Crp/FNR family transcriptional regulator  34.74 
 
 
231 aa  79.3  0.00000000000004  Synechococcus sp. CC9605  Bacteria  normal  normal  0.619242 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  26.61 
 
 
231 aa  79.3  0.00000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.11 
 
 
220 aa  79  0.00000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.41 
 
 
231 aa  77.8  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  27.4 
 
 
231 aa  77.8  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  28.44 
 
 
230 aa  77  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  31.18 
 
 
224 aa  77  0.0000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.52 
 
 
224 aa  75.9  0.0000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.32 
 
 
227 aa  75.9  0.0000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.79 
 
 
236 aa  75.5  0.0000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  29.65 
 
 
246 aa  75.5  0.0000000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.15 
 
 
223 aa  75.1  0.0000000000008  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25.35 
 
 
230 aa  75.1  0.0000000000008  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  24.19 
 
 
227 aa  75.1  0.0000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.64 
 
 
229 aa  74.7  0.000000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.34 
 
 
225 aa  74.3  0.000000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.2 
 
 
226 aa  74.3  0.000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  25 
 
 
238 aa  74.7  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  26.83 
 
 
224 aa  74.3  0.000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  29.5 
 
 
235 aa  74.3  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  23.22 
 
 
226 aa  73.9  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  29.95 
 
 
263 aa  73.9  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  34.66 
 
 
223 aa  74.3  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  23.79 
 
 
225 aa  73.9  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.85 
 
 
232 aa  73.9  0.000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  27.57 
 
 
226 aa  73.2  0.000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  27.85 
 
 
228 aa  73.6  0.000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_008820  P9303_28321  putative regulatory protein  33.74 
 
 
231 aa  73.6  0.000000000003  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.270503 
 
 
-
 
NC_011729  PCC7424_4798  cyclic nucleotide-binding protein  26.61 
 
 
227 aa  73.2  0.000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.11 
 
 
229 aa  72.8  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  23.15 
 
 
240 aa  72.8  0.000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1697  transcriptional regulator, Crp/Fnr family  30.77 
 
 
259 aa  72.4  0.000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.314621  hitchhiker  0.0000199045 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  28.5 
 
 
250 aa  72.4  0.000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.03 
 
 
236 aa  72  0.000000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.7 
 
 
227 aa  71.6  0.00000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  30.99 
 
 
239 aa  71.2  0.00000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  29.63 
 
 
230 aa  71.6  0.00000000001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
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