More than 300 homologs were found in PanDaTox collection
for query gene Vapar_4417 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_4417  transcriptional regulator, Crp/Fnr family  100 
 
 
258 aa  508  1e-143  Variovorax paradoxus S110  Bacteria  normal  0.48784  n/a   
 
 
-
 
NC_010002  Daci_5739  cyclic nucleotide-binding protein  58.59 
 
 
235 aa  228  1e-58  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.172184 
 
 
-
 
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  44.21 
 
 
243 aa  172  5e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_3304  transcriptional regulator, Crp/Fnr family  35.4 
 
 
243 aa  135  6.0000000000000005e-31  Methylocella silvestris BL2  Bacteria  n/a    normal  0.010506 
 
 
-
 
NC_011666  Msil_3301  cyclic nucleotide-binding protein  31.58 
 
 
229 aa  124  2e-27  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00259627 
 
 
-
 
NC_010002  Daci_1825  cyclic nucleotide-binding protein  36 
 
 
269 aa  117  1.9999999999999998e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6568  cyclic nucleotide-binding protein  32.13 
 
 
228 aa  117  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  0.538415  normal  0.0410288 
 
 
-
 
NC_011894  Mnod_6767  cyclic nucleotide-binding protein  32.13 
 
 
228 aa  115  5e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.171014  n/a   
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  38.59 
 
 
233 aa  113  3e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  33.64 
 
 
232 aa  108  8.000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  32.71 
 
 
232 aa  107  3e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2678  transcriptional regulator, Crp/Fnr family  32.73 
 
 
235 aa  102  7e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010725  Mpop_4711  cyclic nucleotide-binding protein  30.88 
 
 
230 aa  100  2e-20  Methylobacterium populi BJ001  Bacteria  normal  0.754309  decreased coverage  0.00295307 
 
 
-
 
NC_010505  Mrad2831_2874  cyclic nucleotide-binding protein  30.33 
 
 
228 aa  100  3e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191735 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  31.52 
 
 
228 aa  100  3e-20  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4566  cyclic nucleotide-binding protein  31.22 
 
 
234 aa  98.6  8e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.940335  normal  0.142026 
 
 
-
 
NC_010172  Mext_4195  cyclic nucleotide-binding  31.22 
 
 
234 aa  97.8  2e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.164725  normal  0.773983 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  30.33 
 
 
236 aa  97.1  3e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  31.31 
 
 
234 aa  95.5  7e-19  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  34.15 
 
 
214 aa  94.4  2e-18  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  31.08 
 
 
251 aa  92.4  6e-18  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.06 
 
 
219 aa  90.5  3e-17  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013161  Cyan8802_0916  transcriptional regulator, Crp/Fnr family  29.55 
 
 
235 aa  89  6e-17  Cyanothece sp. PCC 8802  Bacteria  normal  0.18169  normal 
 
 
-
 
NC_011726  PCC8801_0890  transcriptional regulator, Crp/Fnr family  29.55 
 
 
235 aa  89  6e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  28.51 
 
 
231 aa  86.7  3e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011884  Cyan7425_1533  transcriptional regulator, Crp/Fnr family  31.9 
 
 
231 aa  84.7  0.000000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008820  P9303_28321  putative regulatory protein  37.64 
 
 
231 aa  83.2  0.000000000000003  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.270503 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.21 
 
 
236 aa  83.2  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  28.97 
 
 
220 aa  79.7  0.00000000000004  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  28.95 
 
 
225 aa  79  0.00000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.57 
 
 
252 aa  77.4  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28 
 
 
228 aa  77.4  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  31.36 
 
 
230 aa  77  0.0000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  27.06 
 
 
229 aa  76.6  0.0000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  26.64 
 
 
223 aa  75.9  0.0000000000006  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.09 
 
 
228 aa  75.9  0.0000000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_007516  Syncc9605_2514  Crp/FNR family transcriptional regulator  34.06 
 
 
231 aa  75.5  0.0000000000008  Synechococcus sp. CC9605  Bacteria  normal  normal  0.619242 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.58 
 
 
248 aa  75.5  0.0000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  30.94 
 
 
219 aa  75.1  0.000000000001  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  31.25 
 
 
228 aa  74.7  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.39 
 
 
225 aa  73.9  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  25.47 
 
 
224 aa  73.9  0.000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  30.45 
 
 
223 aa  73.9  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  25.81 
 
 
224 aa  73.9  0.000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  28.64 
 
 
229 aa  73.2  0.000000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  28.77 
 
 
234 aa  73.2  0.000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  32.16 
 
 
239 aa  72.8  0.000000000005  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  28.91 
 
 
224 aa  72.8  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  22.07 
 
 
243 aa  72.8  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  28.33 
 
 
227 aa  72.8  0.000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.31 
 
 
228 aa  72.4  0.000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.7 
 
 
225 aa  72.4  0.000000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  29.48 
 
 
239 aa  72  0.000000000009  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  29.48 
 
 
239 aa  72  0.000000000009  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  28.63 
 
 
225 aa  72  0.00000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  26.73 
 
 
224 aa  71.2  0.00000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.7 
 
 
225 aa  71.6  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  26.99 
 
 
234 aa  71.2  0.00000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.91 
 
 
225 aa  70.9  0.00000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.74 
 
 
217 aa  70.5  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28.17 
 
 
226 aa  70.9  0.00000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  24.32 
 
 
229 aa  70.5  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.55 
 
 
227 aa  71.2  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.02 
 
 
228 aa  70.9  0.00000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  24.54 
 
 
227 aa  70.9  0.00000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.46 
 
 
220 aa  70.9  0.00000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  29.3 
 
 
263 aa  70.1  0.00000000003  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  24.07 
 
 
227 aa  70.1  0.00000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  25.81 
 
 
224 aa  69.7  0.00000000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.14 
 
 
228 aa  69.7  0.00000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  25.23 
 
 
229 aa  70.1  0.00000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  25.35 
 
 
224 aa  69.7  0.00000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  30.56 
 
 
237 aa  69.3  0.00000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  26.11 
 
 
224 aa  69.3  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  28.16 
 
 
239 aa  69.3  0.00000000006  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.23 
 
 
224 aa  68.9  0.00000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  25.35 
 
 
224 aa  68.9  0.00000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  25.79 
 
 
236 aa  68.9  0.00000000008  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  29.2 
 
 
243 aa  68.9  0.00000000008  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  26.34 
 
 
224 aa  68.6  0.00000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  27.84 
 
 
243 aa  68.2  0.0000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  24.88 
 
 
224 aa  67.8  0.0000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  24.88 
 
 
224 aa  67.8  0.0000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  24.5 
 
 
243 aa  68.2  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.15 
 
 
226 aa  68.2  0.0000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  26.85 
 
 
225 aa  68.2  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  24.88 
 
 
224 aa  67.8  0.0000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.67 
 
 
247 aa  67.8  0.0000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  25.94 
 
 
224 aa  67.8  0.0000000002  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  27.91 
 
 
246 aa  67.8  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0229  cyclic nucleotide-binding protein  29.07 
 
 
250 aa  67.4  0.0000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.7 
 
 
226 aa  67.8  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.5 
 
 
226 aa  67  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  27.48 
 
 
231 aa  67  0.0000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  21.49 
 
 
236 aa  66.6  0.0000000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  27.27 
 
 
232 aa  67  0.0000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  28.31 
 
 
239 aa  67  0.0000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  25.73 
 
 
238 aa  66.6  0.0000000004  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  29.35 
 
 
223 aa  66.2  0.0000000005  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  28.27 
 
 
229 aa  66.2  0.0000000005  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
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