More than 300 homologs were found in PanDaTox collection
for query gene Lcho_4140 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  100 
 
 
243 aa  469  1.0000000000000001e-131  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_4417  transcriptional regulator, Crp/Fnr family  44.21 
 
 
258 aa  172  5e-42  Variovorax paradoxus S110  Bacteria  normal  0.48784  n/a   
 
 
-
 
NC_010002  Daci_5739  cyclic nucleotide-binding protein  45.5 
 
 
235 aa  163  2.0000000000000002e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.172184 
 
 
-
 
NC_011666  Msil_3304  transcriptional regulator, Crp/Fnr family  38.6 
 
 
243 aa  147  1.0000000000000001e-34  Methylocella silvestris BL2  Bacteria  n/a    normal  0.010506 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  39.05 
 
 
233 aa  130  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_011666  Msil_3301  cyclic nucleotide-binding protein  33.63 
 
 
229 aa  117  1.9999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00259627 
 
 
-
 
NC_010511  M446_6568  cyclic nucleotide-binding protein  35.38 
 
 
228 aa  106  3e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.538415  normal  0.0410288 
 
 
-
 
NC_011894  Mnod_6767  cyclic nucleotide-binding protein  35.38 
 
 
228 aa  106  3e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.171014  n/a   
 
 
-
 
NC_010725  Mpop_4711  cyclic nucleotide-binding protein  34.67 
 
 
230 aa  104  1e-21  Methylobacterium populi BJ001  Bacteria  normal  0.754309  decreased coverage  0.00295307 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  36.07 
 
 
228 aa  104  1e-21  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2874  cyclic nucleotide-binding protein  34.57 
 
 
228 aa  103  2e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191735 
 
 
-
 
NC_011757  Mchl_4566  cyclic nucleotide-binding protein  34.16 
 
 
234 aa  103  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.940335  normal  0.142026 
 
 
-
 
NC_010172  Mext_4195  cyclic nucleotide-binding  34.16 
 
 
234 aa  103  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  0.164725  normal  0.773983 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  34.16 
 
 
236 aa  102  6e-21  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  31.35 
 
 
214 aa  96.3  4e-19  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  29.76 
 
 
251 aa  92.4  6e-18  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  29.9 
 
 
223 aa  87.4  2e-16  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  29.13 
 
 
257 aa  84.7  0.000000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.52 
 
 
225 aa  83.6  0.000000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  26.64 
 
 
219 aa  82  0.000000000000007  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.52 
 
 
225 aa  81.6  0.000000000000009  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.37 
 
 
224 aa  81.6  0.00000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  26.42 
 
 
240 aa  79.7  0.00000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1825  cyclic nucleotide-binding protein  33.61 
 
 
269 aa  79.7  0.00000000000004  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2085  cyclic nucleotide binding protein  23.26 
 
 
238 aa  79  0.00000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  28.49 
 
 
238 aa  78.2  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0229  cyclic nucleotide-binding protein  33.33 
 
 
250 aa  77.4  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  31.39 
 
 
224 aa  77.4  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  26.6 
 
 
238 aa  76.6  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.1 
 
 
228 aa  76.6  0.0000000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  31.02 
 
 
218 aa  76.6  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.91 
 
 
228 aa  76.3  0.0000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.67 
 
 
224 aa  75.9  0.0000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0890  transcriptional regulator, Crp/Fnr family  27.57 
 
 
235 aa  74.3  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0916  transcriptional regulator, Crp/Fnr family  27.57 
 
 
235 aa  74.3  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.18169  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  25.94 
 
 
236 aa  74.3  0.000000000001  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  30.77 
 
 
225 aa  75.1  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  27.1 
 
 
232 aa  73.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.49 
 
 
234 aa  73.6  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.17 
 
 
225 aa  73.2  0.000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  30.14 
 
 
223 aa  73.6  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  27.19 
 
 
229 aa  73.2  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  22.87 
 
 
243 aa  72.8  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  26.6 
 
 
352 aa  72.4  0.000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  30.05 
 
 
228 aa  72  0.000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  22.83 
 
 
225 aa  72.4  0.000000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  28.23 
 
 
229 aa  72  0.000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  31.53 
 
 
225 aa  72  0.000000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  30.27 
 
 
226 aa  71.6  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  26.43 
 
 
239 aa  71.6  0.00000000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  26.18 
 
 
226 aa  70.9  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  27.31 
 
 
228 aa  70.9  0.00000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  26.17 
 
 
220 aa  71.2  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.94 
 
 
236 aa  70.9  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  26.88 
 
 
219 aa  70.9  0.00000000002  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  23.44 
 
 
231 aa  70.5  0.00000000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  23.79 
 
 
233 aa  70.5  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  27.78 
 
 
238 aa  70.5  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  30.27 
 
 
226 aa  70.9  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011989  Avi_0519  Fnr-like transcriptional activator  27.88 
 
 
246 aa  70.9  0.00000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  30.81 
 
 
225 aa  71.2  0.00000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  26.46 
 
 
231 aa  70.5  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  22.86 
 
 
232 aa  70.1  0.00000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.67 
 
 
225 aa  68.9  0.00000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  26.39 
 
 
232 aa  69.3  0.00000000006  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.1 
 
 
229 aa  68.2  0.0000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  27.14 
 
 
234 aa  68.2  0.0000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.27 
 
 
241 aa  67.4  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  27.18 
 
 
236 aa  67.4  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.19 
 
 
225 aa  67.4  0.0000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  25.87 
 
 
212 aa  67  0.0000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  26.7 
 
 
231 aa  67.8  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.48 
 
 
239 aa  66.6  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  26.14 
 
 
220 aa  66.2  0.0000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.03 
 
 
248 aa  65.9  0.0000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27.14 
 
 
226 aa  65.9  0.0000000006  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  30.7 
 
 
246 aa  65.9  0.0000000006  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  24.2 
 
 
229 aa  65.5  0.0000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  27.44 
 
 
238 aa  65.5  0.0000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2678  transcriptional regulator, Crp/Fnr family  24.65 
 
 
235 aa  65.5  0.0000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  23.04 
 
 
230 aa  65.5  0.0000000008  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.14 
 
 
231 aa  64.3  0.000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  26.8 
 
 
254 aa  65.1  0.000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  23.3 
 
 
227 aa  64.7  0.000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  27.27 
 
 
228 aa  64.3  0.000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.47 
 
 
226 aa  64.7  0.000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  26.8 
 
 
254 aa  65.1  0.000000001  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  31.86 
 
 
225 aa  64.7  0.000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  33.18 
 
 
225 aa  64.3  0.000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.56 
 
 
226 aa  63.9  0.000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  30.48 
 
 
238 aa  63.9  0.000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  22.58 
 
 
227 aa  63.9  0.000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  25.98 
 
 
228 aa  64.3  0.000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  20.74 
 
 
225 aa  63.2  0.000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  28.64 
 
 
218 aa  63.5  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  29.57 
 
 
239 aa  63.5  0.000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.57 
 
 
222 aa  63.2  0.000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.9 
 
 
220 aa  63.5  0.000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  30.58 
 
 
254 aa  63.2  0.000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  26.19 
 
 
224 aa  62.8  0.000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
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