More than 300 homologs were found in PanDaTox collection
for query gene Sden_3540 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3540  chemotaxis sensory transducer  100 
 
 
668 aa  1339    Shewanella denitrificans OS217  Bacteria  normal  0.502982  n/a   
 
 
-
 
NC_008345  Sfri_0216  methyl-accepting chemotaxis sensory transducer  55.87 
 
 
648 aa  643    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4136  methyl-accepting chemotaxis sensory transducer  54.09 
 
 
660 aa  624  1e-177  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4208  methyl-accepting chemotaxis sensory transducer  53.74 
 
 
660 aa  624  1e-177  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4340  methyl-accepting chemotaxis sensory transducer  53.89 
 
 
660 aa  623  1e-177  Shewanella baltica OS195  Bacteria  normal  0.751262  normal  0.782794 
 
 
-
 
NC_009438  Sputcn32_3848  methyl-accepting chemotaxis sensory transducer  53.36 
 
 
660 aa  607  9.999999999999999e-173  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3813  methyl-accepting chemotaxis sensory transducer  53.61 
 
 
658 aa  599  1e-170  Shewanella sp. MR-4  Bacteria  normal  normal  0.0320682 
 
 
-
 
NC_008322  Shewmr7_3904  methyl-accepting chemotaxis sensory transducer  53.77 
 
 
658 aa  601  1e-170  Shewanella sp. MR-7  Bacteria  normal  0.202773  normal  0.313356 
 
 
-
 
NC_008577  Shewana3_4019  methyl-accepting chemotaxis sensory transducer  53.77 
 
 
658 aa  601  1e-170  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4635  methyl-accepting chemotaxis protein  53.46 
 
 
658 aa  590  1e-167  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_0148  methyl-accepting chemotaxis sensory transducer  49.77 
 
 
651 aa  554  1e-156  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3639  methyl-accepting chemotaxis sensory transducer  50.45 
 
 
652 aa  555  1e-156  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_4019  methyl-accepting chemotaxis sensory transducer  49.7 
 
 
646 aa  528  1e-148  Shewanella pealeana ATCC 700345  Bacteria  normal  0.723587  n/a   
 
 
-
 
NC_008700  Sama_3512  putative methyl-accepting chemotaxis sensory transducer  46.68 
 
 
647 aa  473  1e-132  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0139  methyl-accepting chemotaxis protein  31.87 
 
 
650 aa  222  1.9999999999999999e-56  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4309  methyl-accepting chemotaxis sensory transducer  28.99 
 
 
628 aa  174  6.999999999999999e-42  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00619864  normal 
 
 
-
 
NC_009439  Pmen_0717  methyl-accepting chemotaxis sensory transducer  29.85 
 
 
654 aa  151  3e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  34.04 
 
 
646 aa  132  3e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_009656  PSPA7_5564  putative chemotaxis transducer  27.49 
 
 
657 aa  131  4.0000000000000003e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  33.46 
 
 
646 aa  130  1.0000000000000001e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  32.12 
 
 
559 aa  129  2.0000000000000002e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
620 aa  129  2.0000000000000002e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  34.65 
 
 
545 aa  127  5e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  30.61 
 
 
620 aa  127  8.000000000000001e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  34.69 
 
 
560 aa  127  9e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_64060  putative chemotaxis transducer  27.87 
 
 
657 aa  125  3e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0601  methyl-accepting chemotaxis sensory transducer  28.19 
 
 
653 aa  124  5e-27  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  35.21 
 
 
620 aa  124  6e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009616  Tmel_0346  methyl-accepting chemotaxis sensory transducer  29.66 
 
 
560 aa  124  8e-27  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00236335  n/a   
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  34.87 
 
 
648 aa  123  9.999999999999999e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  30.83 
 
 
560 aa  122  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_002947  PP_0562  methyl-accepting chemotaxis sensory transducer  27.6 
 
 
653 aa  122  3e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  32.88 
 
 
648 aa  120  4.9999999999999996e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  29.6 
 
 
620 aa  120  7e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  29.04 
 
 
547 aa  119  9.999999999999999e-26  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  32 
 
 
549 aa  119  1.9999999999999998e-25  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  32.65 
 
 
620 aa  119  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0622  chemotaxis sensory transducer  27.18 
 
 
648 aa  119  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  32.65 
 
 
620 aa  119  1.9999999999999998e-25  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  33.45 
 
 
620 aa  119  1.9999999999999998e-25  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_007005  Psyr_0071  histidine kinase, HAMP region: chemotaxis sensory transducer  32.21 
 
 
658 aa  118  3e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  31.87 
 
 
620 aa  118  3e-25  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  31.69 
 
 
620 aa  118  5e-25  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  36.56 
 
 
630 aa  117  6e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  32.99 
 
 
620 aa  117  6e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2050  methyl-accepting chemotaxis protein  32.03 
 
 
704 aa  117  6.9999999999999995e-25  Colwellia psychrerythraea 34H  Bacteria  normal  0.459277  n/a   
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
620 aa  117  7.999999999999999e-25  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_013512  Sdel_1931  chemotaxis sensory transducer  33.59 
 
 
621 aa  117  7.999999999999999e-25  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  30.56 
 
 
630 aa  117  8.999999999999998e-25  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  30.56 
 
 
630 aa  117  8.999999999999998e-25  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  30.56 
 
 
630 aa  117  8.999999999999998e-25  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  33.75 
 
 
561 aa  117  8.999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_009654  Mmwyl1_2301  methyl-accepting chemotaxis sensory transducer  29.06 
 
 
632 aa  116  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0117  methyl-accepting chemotaxis protein  31.84 
 
 
658 aa  116  1.0000000000000001e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2193  methyl-accepting chemotaxis protein  35.87 
 
 
697 aa  116  1.0000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.56 
 
 
630 aa  117  1.0000000000000001e-24  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  29.12 
 
 
545 aa  116  1.0000000000000001e-24  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009997  Sbal195_3549  methyl-accepting chemotaxis sensory transducer  31.21 
 
 
548 aa  116  2.0000000000000002e-24  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0496  methyl-accepting chemotaxis sensory transducer  26.17 
 
 
670 aa  115  2.0000000000000002e-24  Petrotoga mobilis SJ95  Bacteria  normal  0.474098  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  32.21 
 
 
663 aa  115  2.0000000000000002e-24  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  32.49 
 
 
620 aa  115  2.0000000000000002e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3827  methyl-accepting chemotaxis transducer  31.01 
 
 
695 aa  116  2.0000000000000002e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000221184 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  32.33 
 
 
561 aa  115  2.0000000000000002e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  30.84 
 
 
620 aa  115  2.0000000000000002e-24  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  34.41 
 
 
668 aa  116  2.0000000000000002e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3709  methyl-accepting chemotaxis sensory transducer  31.39 
 
 
707 aa  115  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.852924  normal  0.967698 
 
 
-
 
NC_009665  Shew185_3424  methyl-accepting chemotaxis sensory transducer  30.87 
 
 
548 aa  115  3e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0938  methyl-accepting chemotaxis sensory transducer  30.87 
 
 
548 aa  115  3e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1221  methyl-accepting chemotaxis sensory transducer  29.39 
 
 
564 aa  115  3e-24  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000139892  n/a   
 
 
-
 
NC_008463  PA14_30820  putative methyl-accepting chemotaxis transducer  35.87 
 
 
535 aa  115  3e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142633  hitchhiker  0.0000000000042709 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
552 aa  115  3e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  31.88 
 
 
645 aa  115  4.0000000000000004e-24  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  33.09 
 
 
647 aa  115  4.0000000000000004e-24  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  33.09 
 
 
647 aa  114  5e-24  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_009483  Gura_0960  methyl-accepting chemotaxis sensory transducer  29.57 
 
 
666 aa  114  5e-24  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000181378  n/a   
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  30.29 
 
 
619 aa  114  5e-24  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3352  methyl-accepting chemotaxis sensory transducer  30.87 
 
 
573 aa  114  5e-24  Shewanella baltica OS223  Bacteria  normal  0.729863  normal 
 
 
-
 
NC_010814  Glov_1286  methyl-accepting chemotaxis sensory transducer  34.59 
 
 
538 aa  114  5e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  31.02 
 
 
539 aa  114  6e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  32.48 
 
 
548 aa  114  6e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008700  Sama_0942  putative methyl-accepting chemotaxis sensory transducer  35.37 
 
 
495 aa  114  6e-24  Shewanella amazonensis SB2B  Bacteria  decreased coverage  0.000202207  normal 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  30.53 
 
 
549 aa  114  8.000000000000001e-24  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2239  chemotaxis sensory transducer  33.11 
 
 
648 aa  114  8.000000000000001e-24  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  34.1 
 
 
634 aa  114  9e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  35.66 
 
 
622 aa  113  1.0000000000000001e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  34.24 
 
 
620 aa  113  1.0000000000000001e-23  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  30.13 
 
 
564 aa  113  1.0000000000000001e-23  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
552 aa  112  1.0000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  31.42 
 
 
555 aa  112  2.0000000000000002e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_009092  Shew_0237  methyl-accepting chemotaxis sensory transducer  34.77 
 
 
632 aa  112  2.0000000000000002e-23  Shewanella loihica PV-4  Bacteria  normal  normal  0.997473 
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  33.83 
 
 
620 aa  112  2.0000000000000002e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4745  methyl-accepting chemotaxis protein  29.88 
 
 
658 aa  112  2.0000000000000002e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2237  histidine kinase, HAMP region: chemotaxis sensory transducer  36.21 
 
 
661 aa  112  2.0000000000000002e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.551171  normal  0.645339 
 
 
-
 
NC_010003  Pmob_0228  methyl-accepting chemotaxis sensory transducer  28.42 
 
 
667 aa  112  2.0000000000000002e-23  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0509  methyl-accepting chemotaxis sensory transducer  28.69 
 
 
666 aa  112  2.0000000000000002e-23  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.0000844427  n/a   
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  26.34 
 
 
549 aa  112  2.0000000000000002e-23  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_009783  VIBHAR_02418  hypothetical protein  27.46 
 
 
578 aa  112  2.0000000000000002e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  32.95 
 
 
545 aa  112  2.0000000000000002e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_009654  Mmwyl1_1582  methyl-accepting chemotaxis sensory transducer  30.55 
 
 
678 aa  112  2.0000000000000002e-23  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.85269 
 
 
-
 
NC_010501  PputW619_4403  methyl-accepting chemotaxis sensory transducer  29.78 
 
 
670 aa  112  3e-23  Pseudomonas putida W619  Bacteria  normal  0.604884  normal 
 
 
-
 
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