| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2954 |
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| Symbol | |
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| ID | 4924091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3501394 |
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| End bp | 3503256 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164564 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001095079 |
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| Protein GI | 127513882 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000679912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCATTC GTCACAAATT ACTCGTTAGC GCAGCAGTGT CTATCTGTTC TGTGATAGCG
ATGTTTGGCT TGCAGCGCTT TTCGGCGGCA AAGCTGGATG ATTTGTCCCA TGCTGCACAA
CAAGTTATCG AACTTGAAAA GGATGTTTTG AGTTTACGTC GAGATGAAAA AGACTTTTTT
GCCCGTTTGG ATCTGGCCTA TCTAGATAAG CACAAGACGC AGGCGAGAGA GTTAGACGAG
AAGATGGTCA GCCTGGGAGC CATCTTCGAT CGGCATGATA TCTCCCAGAG CGATCTGCAA
GCCTTTAGGC AGAACCTGAC CCGCTACGAG TCTATCTTTG CCGAGATTGC CGAGCTGCAA
AAGCAGATTG GCCTGCATCC TAAGGATGGC CTCTATGGTG CGCTGCGCAG CGCGGTGCAT
AACGTAGAGA CCCTGGTGAA AGAGAAGAAC GAGCCCGAGC TGATGGTGAC CATGTTGCAG
CTGCGCCGCA ACGAAAAAGA TTTTATGCTC AGGCGCGCCA TGAGTTATCT GGATAAGTTT
AAAGGCAACT TGGCGCTGCT GAGACAGCAA GTTTCTGGCG CCATGTTAAG CGATTCGGTC
AAAGGTGAGC TTAATGCCCT GATCGACGAT TATGAGAAGA ACTTCAAGGC CCTGGTCAGC
AAAGAGCAGG AGCTGGGTCT GGACAAAGAC AGTGGCAGCA TGGCGAGCCT GCGAGACAGT
ATTTCCTCGG CAGAGAAGTC CTTGGTGCAG CTTAAGGCAC AATCCATGGA CGCGATTAGC
GATGCTGAGA GCGCAACTGT TACCATCAGT ATCGTTGTTT TTATCCTAAT TACTCTGGTT
TTAATCGGTT TCACTCTGGC GATCATTCGC AGCATCATGG AGCCTGTGCA GCGGATCAGC
GATGCGATTT CACGCATCGA GGCAACCAAA GATCTGACCC TGAGATGCGA TACTAAGGTG
GATGATGAAA TCGGCCAGAT AGCCCGTCAT TTTAATAGCA TGGTGGAGTC GTTTCAGTCG
CTGATCCGAG AGGTGCTGAC CTCGGTCGAG GTGGTGAATC ACTCCTGTCA GGAGCTGTCG
GAGAACTCGA TGCGTGCCTC GGAAGGGGTG GGACGTCAGC TCAATGAGAC CGACATGGTG
GCGACCGCGA TCACCGAGAT GGGGGCGACC ATAGATGAGA TTGCCAGCAA TACCGAGCTG
GCGGCAGAGC GGGCCGGCAA CACTCATGAT AATGCTCAGC AAGGCCAGGT CGGCGTCGAG
CACACCATAG AGAAGATCCA GGCATTGGCG GCGCAGCTGA CCGATTCGGC CCAGGTGGTC
TCCGAGCTTG AGAAAGACAG CGAAACCATT GGCAGCGTGT TGGATGTGAT CCGTGGAATT
GCAGAGCAGA CCAACCTACT GGCGCTAAAT GCCGCCATCG AGGCTGCCAG GGCCGGTGAG
CAGGGCAGAG GCTTTGCCGT GGTCGCCGAT GAGGTGAGAA GTCTGGCGAT GCGTACCCAG
GAGTCGACCG AGGAGATCGC CGGTATCATT CAGACACTGC AGTCTCGTAC TCGCTCTATT
GTGCAGCTGA TGGAAGCGAC CCAAAGGCAA GGCATTGAGA GTGCCGATCA GGCGGCAAGT
GCCGGCGCCC TGCTGGAGCA GATCAACGCC GATGTCACCA ACATCATGGA CATGAGTACG
CAAATCGCCG CGGCGATCGA GGAGCAGAGC ATGGTAGCCT CCGAGGTGAA CAAGAATGTG
GTAGTGATCC GCGACATCGC CGCCGAGTCG GCCCAGGCGG CGGATGAAAA CGCCAAGGCC
TCCGACGATG TGAAGGCGCG CACTCAGGTA CTCTATCAGG CGGTGAGTCT GTTTAAGATT
TAG
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| Protein sequence | MLIRHKLLVS AAVSICSVIA MFGLQRFSAA KLDDLSHAAQ QVIELEKDVL SLRRDEKDFF
ARLDLAYLDK HKTQARELDE KMVSLGAIFD RHDISQSDLQ AFRQNLTRYE SIFAEIAELQ
KQIGLHPKDG LYGALRSAVH NVETLVKEKN EPELMVTMLQ LRRNEKDFML RRAMSYLDKF
KGNLALLRQQ VSGAMLSDSV KGELNALIDD YEKNFKALVS KEQELGLDKD SGSMASLRDS
ISSAEKSLVQ LKAQSMDAIS DAESATVTIS IVVFILITLV LIGFTLAIIR SIMEPVQRIS
DAISRIEATK DLTLRCDTKV DDEIGQIARH FNSMVESFQS LIREVLTSVE VVNHSCQELS
ENSMRASEGV GRQLNETDMV ATAITEMGAT IDEIASNTEL AAERAGNTHD NAQQGQVGVE
HTIEKIQALA AQLTDSAQVV SELEKDSETI GSVLDVIRGI AEQTNLLALN AAIEAARAGE
QGRGFAVVAD EVRSLAMRTQ ESTEEIAGII QTLQSRTRSI VQLMEATQRQ GIESADQAAS
AGALLEQINA DVTNIMDMST QIAAAIEEQS MVASEVNKNV VVIRDIAAES AQAADENAKA
SDDVKARTQV LYQAVSLFKI
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