| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4019 |
|---|
| Symbol | |
|---|
| ID | 5664403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4881979 |
|---|
| End bp | 4883919 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641238683 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001503864 |
|---|
| Protein GI | 157963830 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.723587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCT CAACGCTCTC CCTTTCAGCC TCAATTACAC TGTTACTCAT TGCGGCGTTA
CTGGCTTCGG TGGTGCTGTG GAGCAACGAC AAACGCCAAC TCATCGAACA ACAGACCTTG
CAACTGCAAC AGATCCAACA GAGTTTTTTA GTCGAGATAA GACGTGAACT CGATAGCTAT
TTATCTAGCG GAGACAGCAA TAAGCTTAAC AGCGCTAAAG TTAAACTTGA GCATATGCAG
ACGCAAATCG CTTCACTAAA CGACCTAAAA ACCACACAAC TACAGCAAGT TGTAATAGCC
TTTACCCAAG CCTTAGATAG TGATTACCGG GCTGCGGGGA AGTTAGCAGG CAACCCAAGA
CAGCTATTAG CCCACGCCGA ATCAGAGATG CTTGATTACA ATGCACGCTT AGCGGATTAC
GCCATCATAG GATTAGACGA ACATCCGGCA CTCGCCAATG AATACTTAAA GCTAACCCGG
GGTTTACCGC CGCTAATCTA TAACTTGTCG CAGATCAGTG AGAGTTACCT TGTCGGCAAA
GAAGATCGAC TCAAGTCGAT ATTAAAGAGC CAAGTCACCG AACTAAATGA GTGGAATGCT
CGGCTCAATT CTCTCGCGTT AATCGGAGTT TATGAGGTAC TTGAAACGGA CGAGTTTACC
CTTGGCGAAG ATGAACCAGA AACCATAGAA ATAGGAGAAG ATGCGAGAGC CGAACTCCTT
AGCCTGAGTA AACGCTACAG TAAAGAGATC GATAACACTC ACGCCTTAAT GATTGATAAT
CAACAATCAC AACAATCATT AATTCAAGAT ATTAGCGTTA TAGAGCAACA GTTATTAGCG
CTAGGCATTC AACAGCAAGA GCAGAATGTG ATCCTGAAAC AAGAACTGAT GTTTGCCATC
TATACCATGG TCTCCATCTT GATTATTTTT GCCGCCAGTT ACCTCATTTT ATTGCAGCGC
CGGGTAGTTA ATCCGCTAAA ACAACTCAGC AACGCATTCC ACAAGCTCAC CGAATCAAAT
AGTCGCGAAC GCATCCCTAT TCTCAGGCGC TGTGAAACGG GACAAATAGC CGCTTATTTT
AATCAGTTAC TCAATCGCTT TGAAAGTGAA GATGAGTTAC AACGACAACA GATGACACAA
GTCTCTGATT CGCTAACTCA ACTGGTTAAT CGCATTGATC ATATTTCGGC AAGCACAGAG
CAAACTCAAC AAGTCGTCCT AACGGCACAG CAGCAGACCG AACACATTCG TTCCTTAGCC
AAAGAGGTGT GTGACACCTC AGAGAAAGTT GAACACAGTG CTCTACAAAC GCAACTGCAG
ATGCAACAAA GCCAACAAGA GGCACAGGCT GTACTCGATG CTACCGACGA GACCCGCTCT
GCCGTAGACC ATTGTCATCA AGCCTTAACT AGCCTATCGA TTTCGGTTGC CGATGTGTCG
CAAATCATCG ATGTTATCGG CAATATTGCC GCGCAAACAA ATCTGCTAGC ACTAAACGCT
GCTATCGAAG CCGCCAGAGC AGGGAAGCAG GGCCGCGGAT TTGCCGTCGT GGCTGAAGAG
GTGCGTAACC TATCTCAACG CACTCAAATA TCGCTGCAAG AAATAATGGA CATACTCAAG
CAACTCACTC AAGCCAACGG CGATTTGGGT TCTAGAGTGG AAGGGATTAA GGATGCCACC
GAAGTACAGA GATCTCGTGC AAATAGCCTG TGGCAAGTCG CCCAAAGTGT ACAAACACAA
GCCAGTGAAA TGGCCATTAC CGCCCAACAA GGCGCCCGGC ATACTCAACA GCAAGTCCGT
CATTTAGATG ACTTTGCCAA CGCAATGATA AGCCTGAAAA ATCACGCCAA GGCAGCATCA
GAGCAATCTG GCGTTATCGC CGCGGAGGTT CAGCAGAGTG TTGAAAATAT CGGTAACAGC
TTAGGGGTCA AGGTTGTTTA G
|
|---|
| Protein sequence | MKISTLSLSA SITLLLIAAL LASVVLWSND KRQLIEQQTL QLQQIQQSFL VEIRRELDSY
LSSGDSNKLN SAKVKLEHMQ TQIASLNDLK TTQLQQVVIA FTQALDSDYR AAGKLAGNPR
QLLAHAESEM LDYNARLADY AIIGLDEHPA LANEYLKLTR GLPPLIYNLS QISESYLVGK
EDRLKSILKS QVTELNEWNA RLNSLALIGV YEVLETDEFT LGEDEPETIE IGEDARAELL
SLSKRYSKEI DNTHALMIDN QQSQQSLIQD ISVIEQQLLA LGIQQQEQNV ILKQELMFAI
YTMVSILIIF AASYLILLQR RVVNPLKQLS NAFHKLTESN SRERIPILRR CETGQIAAYF
NQLLNRFESE DELQRQQMTQ VSDSLTQLVN RIDHISASTE QTQQVVLTAQ QQTEHIRSLA
KEVCDTSEKV EHSALQTQLQ MQQSQQEAQA VLDATDETRS AVDHCHQALT SLSISVADVS
QIIDVIGNIA AQTNLLALNA AIEAARAGKQ GRGFAVVAEE VRNLSQRTQI SLQEIMDILK
QLTQANGDLG SRVEGIKDAT EVQRSRANSL WQVAQSVQTQ ASEMAITAQQ GARHTQQQVR
HLDDFANAMI SLKNHAKAAS EQSGVIAAEV QQSVENIGNS LGVKVV
|
|---|
| |