More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3502 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  62.26 
 
 
621 aa  752    Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  66.45 
 
 
620 aa  781    Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  66.45 
 
 
620 aa  780    Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  65 
 
 
620 aa  735    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  64.35 
 
 
620 aa  771    Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  71.13 
 
 
620 aa  868    Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  66.77 
 
 
620 aa  784    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  100 
 
 
620 aa  1246    Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  65.16 
 
 
620 aa  756    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  66.45 
 
 
620 aa  780    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  60.65 
 
 
620 aa  725    Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  65.48 
 
 
620 aa  757    Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  65.97 
 
 
620 aa  759    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  65.81 
 
 
620 aa  758    Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  57.74 
 
 
620 aa  655    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  74.35 
 
 
620 aa  920    Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  44.77 
 
 
619 aa  461  9.999999999999999e-129  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0685  methyl-accepting chemotaxis sensory transducer  39.35 
 
 
620 aa  429  1e-119  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
541 aa  262  1e-68  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009456  VC0395_0606  methyl-accepting chemotaxis protein  31.57 
 
 
587 aa  263  1e-68  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  41.51 
 
 
541 aa  258  3e-67  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  45.58 
 
 
552 aa  256  6e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  45.24 
 
 
716 aa  255  2.0000000000000002e-66  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  40.73 
 
 
637 aa  251  2e-65  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  44.32 
 
 
712 aa  251  4e-65  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  44.32 
 
 
712 aa  249  1e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  43.26 
 
 
543 aa  248  3e-64  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  41.71 
 
 
541 aa  247  4e-64  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  42.94 
 
 
713 aa  247  4e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  42.33 
 
 
541 aa  244  1.9999999999999999e-63  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000502  methyl-accepting chemotaxis protein  31.09 
 
 
589 aa  245  1.9999999999999999e-63  Vibrio sp. Ex25  Bacteria  normal  0.567249  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  44.51 
 
 
552 aa  243  5e-63  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  34.49 
 
 
542 aa  244  5e-63  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  40.77 
 
 
640 aa  241  4e-62  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  41.38 
 
 
619 aa  237  4e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  40.73 
 
 
605 aa  237  4e-61  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  41.21 
 
 
553 aa  237  4e-61  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_009784  VIBHAR_05387  histidine kinase  30.35 
 
 
589 aa  236  1.0000000000000001e-60  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  40.39 
 
 
540 aa  236  1.0000000000000001e-60  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  46.43 
 
 
637 aa  235  2.0000000000000002e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  38.82 
 
 
544 aa  235  2.0000000000000002e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.91 
 
 
523 aa  234  3e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  43.43 
 
 
629 aa  234  3e-60  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  41.79 
 
 
541 aa  234  3e-60  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  41.55 
 
 
633 aa  232  1e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  44.28 
 
 
636 aa  232  1e-59  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
773 aa  232  2e-59  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  42.42 
 
 
544 aa  232  2e-59  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  41.25 
 
 
662 aa  231  3e-59  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  42.55 
 
 
642 aa  231  3e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
541 aa  230  6e-59  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  41.4 
 
 
647 aa  230  6e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  43.14 
 
 
640 aa  230  7e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  32.67 
 
 
639 aa  229  9e-59  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  42.58 
 
 
714 aa  229  1e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  40.85 
 
 
548 aa  229  1e-58  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  42.82 
 
 
674 aa  228  2e-58  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009092  Shew_2952  methyl-accepting chemotaxis sensory transducer  41.78 
 
 
541 aa  228  2e-58  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000751538  normal 
 
 
-
 
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  41.41 
 
 
548 aa  228  3e-58  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_009654  Mmwyl1_2773  methyl-accepting chemotaxis sensory transducer  40.3 
 
 
540 aa  227  4e-58  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  39.5 
 
 
553 aa  228  4e-58  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  42.3 
 
 
714 aa  226  7e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
638 aa  226  8e-58  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  39.78 
 
 
541 aa  226  9e-58  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  32.95 
 
 
642 aa  226  1e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_007492  Pfl01_3770  chemotaxis sensory transducer  40.91 
 
 
715 aa  226  1e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1020  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
541 aa  225  2e-57  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00762848  n/a   
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  40.68 
 
 
628 aa  225  2e-57  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.48 
 
 
623 aa  224  4e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  42.4 
 
 
628 aa  224  4e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  40.68 
 
 
564 aa  224  4e-57  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  41.79 
 
 
633 aa  224  4e-57  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  44.05 
 
 
647 aa  224  4.9999999999999996e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3557  methyl-accepting chemotaxis transducer  42.15 
 
 
714 aa  224  4.9999999999999996e-57  Pseudomonas putida KT2440  Bacteria  normal  0.386044  normal 
 
 
-
 
NC_009512  Pput_2217  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
714 aa  224  4.9999999999999996e-57  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2074  methyl-accepting chemotaxis sensory transducer  42.44 
 
 
714 aa  223  6e-57  Pseudomonas putida W619  Bacteria  normal  0.203311  normal 
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  42.24 
 
 
555 aa  223  6e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  40.61 
 
 
653 aa  223  7e-57  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  40 
 
 
653 aa  223  8e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  43.22 
 
 
640 aa  223  8e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
547 aa  223  8e-57  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  37.04 
 
 
640 aa  223  8e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  41.83 
 
 
411 aa  223  9e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
714 aa  222  9.999999999999999e-57  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  42.9 
 
 
640 aa  223  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  40.63 
 
 
497 aa  223  9.999999999999999e-57  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  43.7 
 
 
681 aa  222  1.9999999999999999e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  41.19 
 
 
596 aa  222  1.9999999999999999e-56  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_008577  Shewana3_3173  methyl-accepting chemotaxis sensory transducer  40.22 
 
 
541 aa  222  1.9999999999999999e-56  Shewanella sp. ANA-3  Bacteria  normal  0.0131988  normal 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
573 aa  221  3e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  46.56 
 
 
679 aa  221  3.9999999999999997e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2562  methyl-accepting chemotaxis sensory transducer  41.6 
 
 
671 aa  221  3.9999999999999997e-56  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.0046581 
 
 
-
 
NC_009052  Sbal_1015  methyl-accepting chemotaxis sensory transducer  40.88 
 
 
541 aa  220  6e-56  Shewanella baltica OS155  Bacteria  unclonable  0.0000000434326  n/a   
 
 
-
 
NC_008321  Shewmr4_2995  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
541 aa  220  6e-56  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00226615  normal  0.196783 
 
 
-
 
NC_011663  Sbal223_3274  methyl-accepting chemotaxis sensory transducer  40.88 
 
 
541 aa  220  6e-56  Shewanella baltica OS223  Bacteria  normal  0.0175031  normal  0.083895 
 
 
-
 
NC_008322  Shewmr7_3076  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
541 aa  220  6e-56  Shewanella sp. MR-7  Bacteria  unclonable  0.0000214454  normal  0.805143 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  42.26 
 
 
572 aa  219  7.999999999999999e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  38.19 
 
 
653 aa  219  1e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  39.44 
 
 
546 aa  218  2e-55  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  38 
 
 
674 aa  218  2e-55  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
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