Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1007 |
Symbol | |
ID | 5609984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1194734 |
End bp | 1196455 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931855 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001472746 |
Protein GI | 157374146 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.02936 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCTT TAATCGCTCA ATCAGGGAAT GGAAGTGCTC AAAGCTCCAT CACATCGGGG TCTGGCCTTA TGCAGCAGAT AAGGTCAGTT AGGTTTCAAC TCAAGTTAAT TGTATTTCTT ACGGTTATCT CTTTTATACT TTTGGGGTAT AAGGGGATCA CCGGCATGCA GGATGCGGGA GACTCTATCG AGAATCTCTA CAGCCAGGGC ATGCAGCACA GTATAAGGGC TGGTAAGGTG CTCAATGAGC TCGCAAGTGC ACGCAGTGGA CTTTTGCTGG CATTTCAACA CGACCCGAGT GGCAAATTTT CAGAGATGCA TAATCATCCG CTGGAAAAGC ATATCAAGGA TACCCAAGCC TCTATCAAGC TGCTGCATCA TATCGTTGAT AATGAGATTT TAAGCTCTCC TCTGGAAGCT GAGGAACGTG AGCAAATTAA TCGATTAACT GAGCTGCTGG ATAAGGTCAC CATTTCAGGA TTTGAGCCCG CACTCGATGC GTTAAGAAGG GGAGAGTATG AGGAGTCGAA TCACGTATTA CTGACTCAAA TTAACCCTCT ATTTAAGAAT ATCACCACAG AAGCGCAGTC ATTTTTGGAT CTTCAGATCG CCGAAGGGGA AGAGAGTTTT GAACAGTCTC AGGAGAATAT GGCTTCCTTC ATTCTGTTAG TCGCTATGCT TTCCTGCATC AGTACCCTGA TTATCAGTAT CTGTTCTATT ATGATTGTCA GACGAGTTAA CCAGTCAGTG ACGCAACTTG AAAATACTGC GGTCGATATC ACTAATGGCG ATCTGACCAA GCGTATCAAA CTGGGTGGAG ATGATGAGTT TTCACATATT GCAGAGTTCG TGAATCATAT TACTTCCAGA TTTCAAAGTG CGGTGCTAAA TACCCATGAT TCGACATCCA GGTTGGCGAG TTCTGCCGAA CAAAACTCTG TGGTTTCGAC TCAGACCCAA CGAAATGTGA TCGATCAACA ACAGCAGACT CAGCTGATCG CAACGGCTAT TCATCAATTT ACGGCGACGG TACGTGAGGT GGCTCAGAGT GCAGCTGCCG CTGCAACGAC GTCGGAAGAA GCGAATACTG CTGCCTGTAA TGGTCAGAGT GTTGTCGATG AGAGCATCAA GGTCATAGAA ACCCTCTCAC AAGAGATGGA CAGTGCGACC GAGGCGATGA AGCTACTGTC GCAACACTCA GATGAAATTG GCTCTGTGGT CGATGTTATT CAAGGGATCT CTGAACAGAC TAACCTGTTA GCACTCAATG CTGCCATCGA GGCTGCTCGC GCCGGTGAGC AGGGGCGAGG CTTTGCGGTC GTGGCCGATG AGGTTCGTAA TTTAGCTAAG CGTACTCAGG ACTCCACGGA AGAGATCCAG AAGATGATCC AGCGACTACA GCAAGGTGCT CATGACTCTA TGGTGATGAT GGAACGTGGA ACCGAGCAGG CGAAATTGAG TGTAGATAAG TCACAGCAAG CCGGTGATGC ACTGCAGAAA ATTATGGCCA GTATCGAACA GATCAACGCC CTGAATGCAC AGATCGCAAC CGCTTCCGAA GAGCAGAGCT CGGTTACCGA AGAGATAAAT AAGAACATCA TCAATATCAG TGATATCTCA GATCAGACGG CAGCAGGGGC CGAGCAGAGC AATGTGGCTA CCCAGGAGTT AGCTAATCTG GCTGAGTCTA TGCAGCAGGA GATCGCGCAG TATCGGGTGT AG
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Protein sequence | MSALIAQSGN GSAQSSITSG SGLMQQIRSV RFQLKLIVFL TVISFILLGY KGITGMQDAG DSIENLYSQG MQHSIRAGKV LNELASARSG LLLAFQHDPS GKFSEMHNHP LEKHIKDTQA SIKLLHHIVD NEILSSPLEA EEREQINRLT ELLDKVTISG FEPALDALRR GEYEESNHVL LTQINPLFKN ITTEAQSFLD LQIAEGEESF EQSQENMASF ILLVAMLSCI STLIISICSI MIVRRVNQSV TQLENTAVDI TNGDLTKRIK LGGDDEFSHI AEFVNHITSR FQSAVLNTHD STSRLASSAE QNSVVSTQTQ RNVIDQQQQT QLIATAIHQF TATVREVAQS AAAAATTSEE ANTAACNGQS VVDESIKVIE TLSQEMDSAT EAMKLLSQHS DEIGSVVDVI QGISEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRNLAK RTQDSTEEIQ KMIQRLQQGA HDSMVMMERG TEQAKLSVDK SQQAGDALQK IMASIEQINA LNAQIATASE EQSSVTEEIN KNIINISDIS DQTAAGAEQS NVATQELANL AESMQQEIAQ YRV
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