Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2952 |
Symbol | |
ID | 4923660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3498055 |
End bp | 3499680 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164562 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001095077 |
Protein GI | 127513880 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000751538 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAATA TTCAAATCAA GCACAAGATG GCTTTCGGCA TCTTACTCCC CCTCTCGCTC CTCATCTGTA TCTGCATCTT AGCAATCAAC ATGATGAATA ATATCGAGAA AGGTGTCGTC ACCATCTATA ACGACAGAGT CGTTCCGCTA GAAGATCTTA AGGTGATCGC CGACGATTAC GCGGTATTTG TCATCGATGC CATCAACAAG GCCAATGCCG GTGAGTTCAG CGCCGAACAG GCCAATCAAG CCCTGCAGGA AGCAAGCAAC AACATAGACA GCAAATGGCG CCAATACGTC GCCACCGAAC TCACCACGGA TGAGAAACGC TTGGTCGATG AGGCCGAGCG CCTGTTTGTT CCGGCCAACC AGCGTATCAC CCATCTAGAA CAGCTGCTTG GGGGGAAGTC AGGTAATATT GCCGGCCAGC TGCGGGAGGA GATTATCCCA CTCTACCGGG TGATCGATCC CATCAGCGGC ACCATCGCCG AGCTGATCAG CCTGCAGCTC AAGGTCGCCG GCGAGGAGAA AGACAGGGTC GCCGAGATCT ACGAGTCCTC TATCTCCCTC TTCATACTCA TCACCCTGGT GGCCGCCATT GCCAGTATAG TGCTCGGCGT CTGGATCAAC CGCAGCGTAA TGAAACCCAT CAACCACATA CGCACTCAGC TACATACCAT ACAGCAAGAC TCAGATCTCA CTGTCACCTT CGAGCAACTG AATAAGGACG AGCTGGGGCT GATCTCCACC GGGCTCAACG ATGTCTTTCG CCACCTGCGC GGCATCCTCA AAGGGGTCGC CGAGGCGGCC AATAGCGTTA GCGACTCTGC GTTAGCCCTT AACGAGTTCA CCCAGATCTC TAACGCCCGC ATTCAACAGC AGCAGGCGGA GACAGAGCAG ACCGCCACGG CCATGAATGA AATGACGGCA ACGGTTAACG AGGTAGCACA GAGCACCACG GCCGCCGCCG ACTCGGCCAG AAATGCCGAC CGATTCGCCG CCAACGGTAA TGATATCGTC CAGCTGTCGA TTAGCAGCAT GCAGGCGCTG TCGATGCAGA TCCAGAGCAC CTCAGAGGTG ATCACCCACC TGTCCCACGA GAGCCAACAT ATCGGCAGCG TACTGAGCGT CATCAAGGGG ATTGCCGAGC AGACCAACCT GCTGGCCCTC AACGCCGCTA TCGAGGCTGC CAGGGCCGGT GAGCAGGGGC GCGGATTTGC CGTGGTCGCC GACGAGGTTC GCTCCCTCGC CCAGCGCACC CAGGAGGCGA CCCAGGAGAT CGAGACCATG ATAGAGACGC TGCAGAGCGG GGTGAACGAG GCGGTCACCG CCATGGATGT GGGCATTAAA CAGGTGGATG ATGCCAATCA ACAGACCAAC AAGGCGGGGG AAGCGCTACA GGAGATAGTC GCCTCGGTCG ACAACATCAC AGAGATGAAC ACCCATATCG CCACGGCGGC GGAGGAGCAG AGCAGTGTCG CCGAGAGCAT TAACCGCAGC ATTATCGCCA TCAGCGATAT CGCCAGCCAG TCAACGGAAT CTGCCTTAGA GCTGGGTCAC TCCATCGCTC AGCTCACCTC GCTGGCCGAC TCGATGCGGC AACAGGTCAC CACCTTCAGG CTCTGA
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Protein sequence | MNNIQIKHKM AFGILLPLSL LICICILAIN MMNNIEKGVV TIYNDRVVPL EDLKVIADDY AVFVIDAINK ANAGEFSAEQ ANQALQEASN NIDSKWRQYV ATELTTDEKR LVDEAERLFV PANQRITHLE QLLGGKSGNI AGQLREEIIP LYRVIDPISG TIAELISLQL KVAGEEKDRV AEIYESSISL FILITLVAAI ASIVLGVWIN RSVMKPINHI RTQLHTIQQD SDLTVTFEQL NKDELGLIST GLNDVFRHLR GILKGVAEAA NSVSDSALAL NEFTQISNAR IQQQQAETEQ TATAMNEMTA TVNEVAQSTT AAADSARNAD RFAANGNDIV QLSISSMQAL SMQIQSTSEV ITHLSHESQH IGSVLSVIKG IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLAQRT QEATQEIETM IETLQSGVNE AVTAMDVGIK QVDDANQQTN KAGEALQEIV ASVDNITEMN THIATAAEEQ SSVAESINRS IIAISDIASQ STESALELGH SIAQLTSLAD SMRQQVTTFR L
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