| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3838 |
|---|
| Symbol | |
|---|
| ID | 1171483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3987645 |
|---|
| End bp | 3989507 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637345605 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | NP_719371 |
|---|
| Protein GI | 24375328 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAATCC GCTCGAAATT GTTACTCAGT GCTGCCGTAT CCGTAACGGC TGTGATTGCC
ATGTTTGGAT TGCAACTTTA TACAAATTCG GTTGAGTCGG AACTCTCCCA TGCGGCACAA
ACCGTGCTTG AACTCGAGCG TGATGTGTTG TTGCTGCGTA AAAATGAAAA GGATTTTTTT
GGTCGTAAAG ACATTCAATA TGTTGAAAAA CATAAACAAA CTCATGTTCA AATAGATGAC
ATGATCCCGA GGCTTGAGAG TATTTTTAAA AAATACGATG TACCCGTTGC TTCCCTCGAA
AGTTTTGATC GTAATCTAAA CCAATACCAA GTCGCATTTA ATGAAGTTGT TCAACTACAA
CAAGAAATAG GATTAACGCC TAAAACAGGC CTTTATGGCA CCCTAAGAAC CGCGGTACAC
AATATCGAAT CCATGCTTAA GGAATATGAT CAATTATCCT TACAAGTTGC CATGCTACAG
CTTAGACGCA ATGAAAAAGA TTTTATGTTG CGCCGCGAAA TGAGCTATGT AGAGACTTTT
GACAGCAATA TTGCTGTGTT TAATACCAGT CTAAGATCGT CAAGTTTAGA TTTCGATACG
CAAAATAAAA TTGCCGCCTT GATAGACCAA TATCAAAAGG ATTTTAAAAG CCTTGTCAGT
AAAGAACAGC AACTGGGATT AGATGAAAAG CAAGGCACGA TGGCGCAATT AGTCGCGGCC
AATCGATTAA CTGAATCTAG CGCCGACGAA CTGCATAACC TTGCCTTAAA AGCGATTGAT
GAGACTGAGA ATAGTAGTCG GAATATTGGG ATTACTGTCT TTCTGATCAT TGCATTAATC
CTAGGCATAA TTACTTACCT GATTATCCGC AGCATTATCA CTCCAGTAGA GCGTATTACT
CAGGTGATTT CTCGTATCGA AGTGAGTAAA GACTTAACCC TAAGGTGTGA TGCGTCAACG
CAAGATGAGT TAGGTGAAAT AGCACAGCAT TTCAATAGCA TGGTTGGAAG TTTTCAGCAG
CTTATCGAGC AAGTCATTGA ATCTGTTGCT ACGATTAACA CTTCAAGTAA GAGCGTTTCA
CAAAATGCAA TGCTTGCTTC AGAGGGCGTG GCGCAACAAC TCAACGAAAC CGATATGGTG
GCTACTGCGA TTACTGAAAT GGGAGCAACC ATTGATGAAA TTGCTAAAAC TACGGAACTT
GCTGCCCTTA AGGCGGGTAA AACCCATGAT AACGCTCAGT TAGGTCAAAG TGAGGTTGAA
CAGACGATTC TTAAAATCAG GCAGTTGTCA GAACAAATCA ATACGAGTGC CTCTGTGGTT
GATGAGCTCG AGCGTGATAG CGAAACCATT GGTAGTGTGT TAGATGTAAT CCGTGGCATT
GCAGAGCAAA CCAATCTGCT GGCGCTTAAT GCTGCGATTG AAGCGGCGCG AGCTGGTGAA
CAGGGACGAG GCTTTGCGGT GGTTGCTGAC GAGGTACGTA GTCTTGCTAT GCGCACTCAG
TCATCAACCC AGGAAATTGC CAATATTATT CAGACATTAC AAAGCCGAAC TCGCGCGATT
GTGCAGCTAA TGGATGCGAG CCAAAAACAA GGAGCAGAAA GCGCGGAGCA AGCAGCCGCT
GCTGGTGAGT TACTAAAACT TATCAATAAT GACGTGCGTA ATATTATGGA TATGAGCACT
CAGATTGCCG CTGCGATTGA AGAGCAAAGT ATGGTGGCTG CTGAAGTGAA TAAGAACGTC
GTTGTTATCC GTGATATTGC AGAGGATTCG TCTCGAGCGG CAGATGCCAA TGCTTCAGCA
TCAGATGAAT TAAGAACTCG CGCCGAATAT CTTGTGAGCG CAGTAAGCCA CTTTAAAATC
TAA
|
|---|
| Protein sequence | MLIRSKLLLS AAVSVTAVIA MFGLQLYTNS VESELSHAAQ TVLELERDVL LLRKNEKDFF
GRKDIQYVEK HKQTHVQIDD MIPRLESIFK KYDVPVASLE SFDRNLNQYQ VAFNEVVQLQ
QEIGLTPKTG LYGTLRTAVH NIESMLKEYD QLSLQVAMLQ LRRNEKDFML RREMSYVETF
DSNIAVFNTS LRSSSLDFDT QNKIAALIDQ YQKDFKSLVS KEQQLGLDEK QGTMAQLVAA
NRLTESSADE LHNLALKAID ETENSSRNIG ITVFLIIALI LGIITYLIIR SIITPVERIT
QVISRIEVSK DLTLRCDAST QDELGEIAQH FNSMVGSFQQ LIEQVIESVA TINTSSKSVS
QNAMLASEGV AQQLNETDMV ATAITEMGAT IDEIAKTTEL AALKAGKTHD NAQLGQSEVE
QTILKIRQLS EQINTSASVV DELERDSETI GSVLDVIRGI AEQTNLLALN AAIEAARAGE
QGRGFAVVAD EVRSLAMRTQ SSTQEIANII QTLQSRTRAI VQLMDASQKQ GAESAEQAAA
AGELLKLINN DVRNIMDMST QIAAAIEEQS MVAAEVNKNV VVIRDIAEDS SRAADANASA
SDELRTRAEY LVSAVSHFKI
|
|---|
| |