More than 300 homologs were found in PanDaTox collection
for query gene SO_3838 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  92.1 
 
 
620 aa  1095    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  61.94 
 
 
620 aa  744    Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  100 
 
 
620 aa  1242    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  61.77 
 
 
620 aa  744    Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  61.94 
 
 
621 aa  752    Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  83.39 
 
 
620 aa  1018    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  83.23 
 
 
620 aa  985    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  82.9 
 
 
620 aa  1012    Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  82.42 
 
 
620 aa  1009    Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  60.48 
 
 
620 aa  715    Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  62.1 
 
 
620 aa  755    Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  91.61 
 
 
620 aa  1085    Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  82.42 
 
 
620 aa  1009    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  91.45 
 
 
620 aa  1087    Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  58.91 
 
 
620 aa  660    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  65 
 
 
620 aa  786    Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  44.35 
 
 
619 aa  449  1e-125  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0685  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
620 aa  427  1e-118  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  44.86 
 
 
552 aa  258  2e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
541 aa  253  8.000000000000001e-66  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  42.94 
 
 
712 aa  247  4.9999999999999997e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  43.22 
 
 
712 aa  246  9e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  43.84 
 
 
713 aa  246  9.999999999999999e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009456  VC0395_0606  methyl-accepting chemotaxis protein  31.1 
 
 
587 aa  246  9.999999999999999e-64  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  41.62 
 
 
637 aa  244  3.9999999999999997e-63  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  40.87 
 
 
773 aa  241  2.9999999999999997e-62  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  42.37 
 
 
541 aa  241  4e-62  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  40.88 
 
 
541 aa  240  6.999999999999999e-62  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_013457  VEA_000502  methyl-accepting chemotaxis protein  31.63 
 
 
589 aa  239  6.999999999999999e-62  Vibrio sp. Ex25  Bacteria  normal  0.567249  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  41.98 
 
 
629 aa  239  1e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  38.66 
 
 
633 aa  239  1e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  45.24 
 
 
679 aa  237  5.0000000000000005e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  41.93 
 
 
541 aa  237  5.0000000000000005e-61  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  44.84 
 
 
637 aa  236  6e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  41.88 
 
 
619 aa  236  7e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  44.25 
 
 
552 aa  236  8e-61  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  42.36 
 
 
634 aa  236  9e-61  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  40.67 
 
 
543 aa  235  1.0000000000000001e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  43.15 
 
 
716 aa  235  2.0000000000000002e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  41.39 
 
 
653 aa  234  4.0000000000000004e-60  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  42.69 
 
 
674 aa  233  9e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
640 aa  233  9e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  41.71 
 
 
640 aa  232  2e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  41.81 
 
 
548 aa  231  2e-59  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  41.01 
 
 
642 aa  230  5e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  39.61 
 
 
605 aa  230  5e-59  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  39.55 
 
 
640 aa  230  7e-59  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
638 aa  228  2e-58  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
639 aa  226  7e-58  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  37.88 
 
 
541 aa  226  9e-58  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  42.28 
 
 
634 aa  225  1e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  42.38 
 
 
642 aa  226  1e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.82 
 
 
523 aa  226  1e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  42.03 
 
 
638 aa  224  3e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  42.99 
 
 
628 aa  224  4e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  42.56 
 
 
572 aa  224  4.9999999999999996e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  44.18 
 
 
681 aa  224  4.9999999999999996e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
647 aa  223  8e-57  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  43.67 
 
 
636 aa  223  8e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009784  VIBHAR_05387  histidine kinase  30.35 
 
 
589 aa  223  8e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  35.55 
 
 
653 aa  223  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  39.5 
 
 
674 aa  222  9.999999999999999e-57  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  42.65 
 
 
634 aa  223  9.999999999999999e-57  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  40.27 
 
 
553 aa  222  1.9999999999999999e-56  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
542 aa  221  3e-56  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  43.99 
 
 
676 aa  220  5e-56  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  41.69 
 
 
560 aa  220  6e-56  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  40.17 
 
 
623 aa  219  1e-55  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
623 aa  219  1e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
623 aa  219  1e-55  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
623 aa  219  2e-55  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
714 aa  218  2.9999999999999998e-55  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  40.17 
 
 
546 aa  218  2.9999999999999998e-55  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
552 aa  218  2.9999999999999998e-55  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  37.61 
 
 
739 aa  218  2.9999999999999998e-55  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  37.27 
 
 
541 aa  218  2.9999999999999998e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
552 aa  218  2.9999999999999998e-55  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  38.07 
 
 
544 aa  218  2.9999999999999998e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  42.41 
 
 
544 aa  218  2.9999999999999998e-55  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  41.99 
 
 
544 aa  218  2.9999999999999998e-55  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  37.89 
 
 
647 aa  218  4e-55  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  39.77 
 
 
653 aa  218  4e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  41.64 
 
 
652 aa  217  5e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  41.74 
 
 
638 aa  216  7e-55  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  40.8 
 
 
411 aa  216  9.999999999999999e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
564 aa  216  9.999999999999999e-55  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  41.29 
 
 
548 aa  216  9.999999999999999e-55  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_002947  PP_2861  methyl-accepting chemotaxis sensory transducer  41.99 
 
 
544 aa  215  1.9999999999999998e-54  Pseudomonas putida KT2440  Bacteria  normal  normal  0.445183 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  39.19 
 
 
557 aa  215  1.9999999999999998e-54  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  38.61 
 
 
493 aa  215  1.9999999999999998e-54  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  41.69 
 
 
650 aa  215  1.9999999999999998e-54  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  41.44 
 
 
638 aa  214  2.9999999999999995e-54  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  38.33 
 
 
641 aa  214  2.9999999999999995e-54  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
658 aa  214  2.9999999999999995e-54  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  39.3 
 
 
640 aa  215  2.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
540 aa  214  2.9999999999999995e-54  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
623 aa  214  2.9999999999999995e-54  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
492 aa  214  3.9999999999999995e-54  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_009438  Sputcn32_0323  methyl-accepting chemotaxis sensory transducer  41.28 
 
 
623 aa  214  3.9999999999999995e-54  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
492 aa  214  3.9999999999999995e-54  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
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