More than 300 homologs were found in PanDaTox collection
for query gene Sfri_0861 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  62.48 
 
 
541 aa  637    Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  68.7 
 
 
541 aa  721    Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  100 
 
 
542 aa  1094    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  58.07 
 
 
541 aa  618  1e-176  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009438  Sputcn32_1020  methyl-accepting chemotaxis sensory transducer  62.48 
 
 
541 aa  612  9.999999999999999e-175  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00762848  n/a   
 
 
-
 
NC_009052  Sbal_1015  methyl-accepting chemotaxis sensory transducer  62.85 
 
 
541 aa  610  1e-173  Shewanella baltica OS155  Bacteria  unclonable  0.0000000434326  n/a   
 
 
-
 
NC_009997  Sbal195_1117  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
541 aa  605  9.999999999999999e-173  Shewanella baltica OS195  Bacteria  normal  0.0100073  normal  0.0339889 
 
 
-
 
NC_011663  Sbal223_3274  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
541 aa  607  9.999999999999999e-173  Shewanella baltica OS223  Bacteria  normal  0.0175031  normal  0.083895 
 
 
-
 
NC_009665  Shew185_1084  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
541 aa  606  9.999999999999999e-173  Shewanella baltica OS185  Bacteria  hitchhiker  0.000100295  n/a   
 
 
-
 
NC_008321  Shewmr4_2995  methyl-accepting chemotaxis sensory transducer  61.55 
 
 
541 aa  596  1e-169  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00226615  normal  0.196783 
 
 
-
 
NC_008322  Shewmr7_3076  methyl-accepting chemotaxis sensory transducer  61.55 
 
 
541 aa  596  1e-169  Shewanella sp. MR-7  Bacteria  unclonable  0.0000214454  normal  0.805143 
 
 
-
 
NC_008577  Shewana3_3173  methyl-accepting chemotaxis sensory transducer  61.55 
 
 
541 aa  594  1e-168  Shewanella sp. ANA-3  Bacteria  normal  0.0131988  normal 
 
 
-
 
NC_009092  Shew_2952  methyl-accepting chemotaxis sensory transducer  58.96 
 
 
541 aa  590  1e-167  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000751538  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  58.78 
 
 
541 aa  588  1e-167  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  59.33 
 
 
541 aa  585  1e-166  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
543 aa  282  1e-74  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1374  methyl-accepting chemotaxis protein  32.79 
 
 
541 aa  258  3e-67  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  41.29 
 
 
642 aa  251  3e-65  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.17 
 
 
636 aa  250  4e-65  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  41.71 
 
 
640 aa  250  5e-65  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  41.43 
 
 
629 aa  246  4.9999999999999997e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  42.44 
 
 
650 aa  246  6e-64  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  34.49 
 
 
620 aa  243  5e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  40.77 
 
 
642 aa  243  7.999999999999999e-63  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  38.44 
 
 
637 aa  241  2e-62  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  41.37 
 
 
637 aa  240  5e-62  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_008740  Maqu_3284  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
522 aa  239  6.999999999999999e-62  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  35.14 
 
 
639 aa  239  9e-62  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  42.9 
 
 
552 aa  239  9e-62  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
638 aa  239  9e-62  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
638 aa  239  1e-61  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  41.79 
 
 
681 aa  239  1e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.01 
 
 
523 aa  239  1e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  42.7 
 
 
638 aa  238  2e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  43.24 
 
 
638 aa  237  3e-61  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  43.24 
 
 
638 aa  238  3e-61  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  41.06 
 
 
676 aa  238  3e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
541 aa  237  4e-61  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4541  methyl-accepting chemotaxis protein  40.5 
 
 
541 aa  236  6e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.726322  n/a   
 
 
-
 
NC_010002  Daci_3750  methyl-accepting chemotaxis sensory transducer  31.67 
 
 
533 aa  236  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  0.13147  normal  0.360613 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  38.67 
 
 
620 aa  234  4.0000000000000004e-60  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  37.15 
 
 
674 aa  233  5e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  40.23 
 
 
647 aa  233  5e-60  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  40.79 
 
 
640 aa  233  6e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  39.82 
 
 
647 aa  232  1e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  39.77 
 
 
647 aa  232  1e-59  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  37.6 
 
 
541 aa  231  3e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4266  chemotaxis sensory transducer  36.63 
 
 
546 aa  231  3e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.261421  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  39.39 
 
 
620 aa  230  4e-59  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  38.44 
 
 
573 aa  230  4e-59  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  38.92 
 
 
546 aa  229  7e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  40.35 
 
 
552 aa  229  7e-59  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  38.3 
 
 
739 aa  229  8e-59  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  34.3 
 
 
541 aa  228  2e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  37.16 
 
 
541 aa  228  3e-58  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  40.11 
 
 
633 aa  227  5.0000000000000005e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004578  PSPTO_3580  methyl-accepting chemotaxis protein  38.23 
 
 
546 aa  227  5.0000000000000005e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  35.46 
 
 
621 aa  226  7e-58  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
620 aa  226  8e-58  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  33.55 
 
 
541 aa  225  1e-57  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  38.66 
 
 
619 aa  226  1e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  31.43 
 
 
542 aa  225  1e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
773 aa  226  1e-57  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_011663  Sbal223_0921  methyl-accepting chemotaxis sensory transducer  33.12 
 
 
541 aa  224  2e-57  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4706  histidine kinase, HAMP region: chemotaxis sensory transducer  38.55 
 
 
541 aa  225  2e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  40.29 
 
 
411 aa  224  2e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2907  chemotaxis sensory transducer  32.58 
 
 
541 aa  224  2e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.300582 
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  40.67 
 
 
541 aa  224  3e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  36.11 
 
 
620 aa  224  4e-57  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
541 aa  224  4e-57  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  39.45 
 
 
653 aa  223  6e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  37.78 
 
 
570 aa  223  6e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  33.63 
 
 
541 aa  222  9.999999999999999e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  35.7 
 
 
620 aa  223  9.999999999999999e-57  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  39.61 
 
 
541 aa  223  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
572 aa  222  9.999999999999999e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  40.12 
 
 
647 aa  222  9.999999999999999e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  35.9 
 
 
620 aa  222  9.999999999999999e-57  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  35.9 
 
 
620 aa  222  9.999999999999999e-57  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  33.76 
 
 
541 aa  221  1.9999999999999999e-56  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  36.59 
 
 
541 aa  221  1.9999999999999999e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  36.68 
 
 
620 aa  221  3e-56  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009831  Ssed_1006  methyl-accepting chemotaxis sensory transducer  37.06 
 
 
573 aa  221  3.9999999999999997e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  37.11 
 
 
546 aa  220  5e-56  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  38.44 
 
 
541 aa  220  6e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  36.27 
 
 
645 aa  220  6e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  35.68 
 
 
712 aa  220  6e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
647 aa  220  6e-56  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  38.87 
 
 
620 aa  219  7.999999999999999e-56  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  33.55 
 
 
541 aa  219  8.999999999999998e-56  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_007005  Psyr_3348  histidine kinase, HAMP region: chemotaxis sensory transducer  37.43 
 
 
542 aa  218  1e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.946905  normal  0.024921 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  35.92 
 
 
712 aa  219  1e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009997  Sbal195_0931  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
541 aa  219  1e-55  Shewanella baltica OS195  Bacteria  normal  normal  0.476721 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  37.87 
 
 
548 aa  219  1e-55  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009656  PSPA7_4141  chemotaxis transducer  39.4 
 
 
541 aa  218  2e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  39.32 
 
 
425 aa  218  2e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_008700  Sama_2502  putative methyl-accepting chemotaxis sensory transducer  35.49 
 
 
649 aa  218  2e-55  Shewanella amazonensis SB2B  Bacteria  normal  0.988754  normal 
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  33.87 
 
 
541 aa  217  4e-55  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_004578  PSPTO_5160  methyl-accepting chemotaxis protein  41.37 
 
 
647 aa  217  4e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.391343  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  40.12 
 
 
624 aa  217  5e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
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