| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0339 |
|---|
| Symbol | |
|---|
| ID | 5190931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 386498 |
|---|
| End bp | 388123 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640584785 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001265696 |
|---|
| Protein GI | 148545594 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.722367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTAC GCAACATGAA TATCGCCCCG CGCGCGCTTC TCGGCTTCGC GCTCATCGGC
CTGCTGATGC TCGGCCTTGG TATCTTCTCC CTGGTACAAA TGGGCAACAT CCGCCAGGCG
GGCGTTGCCA TCGAGCAAGT CAGCGTGCCC AGCATCAAGA TCCTCGACGA ACTCACCGCG
CTGAACCTGC GCATGCGCAC GCTTTCCTAC CGCCTGCTGC TCAACCGCGA GCCGGCAACC
CAACGCGATA CCCTCGATCT GCTGGACCAG CGCAACAGCC AGATCGACCG TGCACGCCAG
GCCTACCTGC CAATGATCGT CGCCGCCGAC GAACAGGCAG CATTCGACCA GTACGGTCAG
TTGCTCAACC AATACCGCCA GCTGGAATCG CGCATGCGCA CACTGAGCCA GGCCGATCGC
CTGGATGAAT TGCGTGACCT GCTCAACCGC GACCTGCTGG CCAACTCCGA GCAGATCAAC
AAGGTCATGG ACACCTTGGT ACGCATCAAC ACTGACCAGA CTCGCGCCAC CAACGAAAAA
GCCGCCAACC AGTATGCCGG CGCTTTCGCC CTGGTGATCG GCCTGTTGGT TGCCGCCACC
GTACTGACCT TCGCCTGTGC TTTCCTGCTG ACCCGCAGTA TCGTCAAGCC GATCGAAGAA
GCACTCAAAT GCGCCGAGCA AGTCGCCGAC GGCGACCTGA CCCACTTCAT CCGCGCAGAG
GGCACCGACG AAGCCGCCCG GCTGTTGCGC GCCATGGCGC GCATGCAGGA CAAGTTGCGC
GATACCTTGC AGCAGATCGC CGGCTCCGCC ACCCAGCTGG CCTCGGCGGC CGAAGAGTTG
AATGCCGTCA CCGACGAAAG TGCCCGTGGC CTGCAGCAGC AGAACAATGA GATTGAACAG
GCCGCCACTG CTGTCACCGA AATGACCAGC GCAGTGGAAG AAGTGGCGCG CAATGCCGTA
AGCACATCAG AAGCGTCCAG TGAAGCCAGC CGCTCCACCG GCGATGGTCG TGACCTGGTG
ATGGAAACCG TGGGTGCGAT CGAGCGCATG AGCGGTGATG TGCAGGCCAC CGCCAAGCTG
ATTACTCACC TGGCCGAACA GTCGCGCGAC ATTGGCAAGG TGTTGGACGT GATCCGTGGC
CTGGCCGACC AGACCAACCT GCTGGCGCTC AACGCAGCCA TCGAAGCCGC GCGGGCCGGT
GAAGCGGGCC GTGGTTTTGC CGTGGTCGCC GATGAAGTGC GCGCGCTAGC TCATCGTACC
CAGCAGTCGA CCAGTGAAAT CGAGCGGATG ATCGGCAGCA TCCAGGGGGG TACCGAAGAA
GCGGTTGAGT CGATGCGCAC CAGCACCGAA CGCGCCGAAT CGACGCTGAA CATCGCCCGC
GGTGCAGGCA TGGCGCTGGA TACGATTGCC GGGGCGGTAG CGCAGATCAA CGAGCGTAAC
CTGGTGATTG CCAGCGCGGC GGAAGAACAG GCACAGGTGG CGCGGGAAGT GGACCGCAAC
CTAGTGAACA TCAATGACCT GTCGGTGCAG AGCGCTACCG GTGCCCATCA GACCAGTGCG
GCGAGTGCAG AGCTGTCGCG GTTGGCGGTG GACCTTAATA GTTTGGTGGC GCGGTTCCGC
ACCTGA
|
|---|
| Protein sequence | MSLRNMNIAP RALLGFALIG LLMLGLGIFS LVQMGNIRQA GVAIEQVSVP SIKILDELTA
LNLRMRTLSY RLLLNREPAT QRDTLDLLDQ RNSQIDRARQ AYLPMIVAAD EQAAFDQYGQ
LLNQYRQLES RMRTLSQADR LDELRDLLNR DLLANSEQIN KVMDTLVRIN TDQTRATNEK
AANQYAGAFA LVIGLLVAAT VLTFACAFLL TRSIVKPIEE ALKCAEQVAD GDLTHFIRAE
GTDEAARLLR AMARMQDKLR DTLQQIAGSA TQLASAAEEL NAVTDESARG LQQQNNEIEQ
AATAVTEMTS AVEEVARNAV STSEASSEAS RSTGDGRDLV METVGAIERM SGDVQATAKL
ITHLAEQSRD IGKVLDVIRG LADQTNLLAL NAAIEAARAG EAGRGFAVVA DEVRALAHRT
QQSTSEIERM IGSIQGGTEE AVESMRTSTE RAESTLNIAR GAGMALDTIA GAVAQINERN
LVIASAAEEQ AQVAREVDRN LVNINDLSVQ SATGAHQTSA ASAELSRLAV DLNSLVARFR
T
|
|---|
| |