| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1006 |
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| Symbol | |
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| ID | 5610064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1192645 |
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| End bp | 1194366 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931854 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001472745 |
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| Protein GI | 157374145 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCGG TAGATCACCT CACAGGGAAT GTTCGGGTTC AACACTCCAA TAACCAAACG
AACGGATTGA TGGATAAAAT TAAATCGGTC CGGTTCCAGC AAAAGTTAAT AGCATTCCTC
ACGATCATCT CATTTCTGTT TCTTGGCTAC CAAGGCGTGA CGGCAATGCA GCAGGCAGGC
TCATCGATAG AGAGTCTGTA TAACCAAGAG ATGCAGCAGA GCATTCAGGC GACTAAGGTT
CTTGAGGAGT TAGGCAGTGC CCGTAGTGGA TTGCTGCTGG CATTTCAGCA TGATCCAACT
AACCCATTTT CCGAAATGCA CAACCATGAA GTCGATAAAC ATATTGCCGA TACTGAGAGC
TCTATCCGAA GCCTTCATCA GATCATCGAT AATGAGATCT TAGAATCACC ACTGGCAGGA
GATGAGCTGG CCAAGATAAA GCAGCTGGAG CGACTTCTTG ATAAAGTGAC AACATCGGGT
TTCAATCCGG CTTTAGATGC ACTGAGGCAG GGGGATTATC TGGGTTCCAA TCGAATTTTA
CTGACTCAGA TTAATCCTCT GTTTAAAGAG ATCACTGCCG AGACGGAGGC TTTCCTGACG
TTAGAATTAG ATAAAGCCAA GATCAAGTTT GATGAGTCCC AATCGAGTGT TGCCACCTTT
ATTCCAATGG TCATACTCTT CTCTACTATA AGTATTTTAA TCATTACTAT TTCATCAACC
TTGCTGATCC GTAGGGTTAG TAAGGCGGTT GTCGTACTGG AAGGTACGGC GGTCGACATC
GCTAACGGCG ATCTGACTAA ACGCATAGAG CTGGGTGGAG ACGATGAGTT TTCACATATT
GCAGATTATG TGAATCAAAT TGCCTACAGG TTTCAGCATG CGGTGCAAAA TACCCATGAT
TCGACATCCC GCTTGGCGAG TTCGGCCGAA GAAAATTCAG TGGTATCGAC CCAGACCCAA
CGTAACGTGG TCGATCAGCA GCAGCAGACC CAATTGATCG CAACGGCTAT TCACCAATTT
ACGGCGACGG TACGTGAGGT GGCTCAGAGC GCCGCCGCAG CAGCGACGAC GTCGGAAGAG
GCTAATGGCG CCGCGACTAA TGGTCAGAGT GTTGTCGATG AGAGCATTTC GGTCATAGAA
ACCCTCTCTA AAGAGATGGA CAGTGCCACC GAAGCGATGA AGCTATTATC ACAACATTCG
GATGAAATTG GCTCAGTGGT CGATGTTATT CAGGGGATCT CAGAGCAGAC GAACCTGTTA
GCTCTCAATG CTGCCATCGA GGCCGCTCGC GCCGGAGAGC AGGGACGAGG TTTTGCCGTC
GTGGCCGATG AAGTACGAAA TTTGGCTAAG CGAACTCAGG ACTCTACGGA AGAGATCCAG
AAGATGATCC AGCGACTACA GCAAGGTGCC CGTGATTCTA TGGTGATGAT GGAACGTGGA
ACCGAGCAGG CGAAGTTGAG TGTCGATAAA TCCCAGCAAG CCGGTGATGC GCTGCAGCAG
ATCATGGCCA GTATCGAGCA GATCAATGCT TTGAATGCTC AGATAGCGAC CGCTTCCGAA
CAGCAGAGCT CGGTTACCGA AGAGATAAAC CAAAACATCA TCAATATCAG CGATATTTCG
GATCAGACCG CAGCAGGGGC CGAGCAGAGT AATGTGGCCA CTCAGGAGTT AGCTAACCTG
GCCGAGTCGA TGCAGCAGGA GATCGCCCAC TACAGGGTGT AG
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| Protein sequence | MSAVDHLTGN VRVQHSNNQT NGLMDKIKSV RFQQKLIAFL TIISFLFLGY QGVTAMQQAG
SSIESLYNQE MQQSIQATKV LEELGSARSG LLLAFQHDPT NPFSEMHNHE VDKHIADTES
SIRSLHQIID NEILESPLAG DELAKIKQLE RLLDKVTTSG FNPALDALRQ GDYLGSNRIL
LTQINPLFKE ITAETEAFLT LELDKAKIKF DESQSSVATF IPMVILFSTI SILIITISST
LLIRRVSKAV VVLEGTAVDI ANGDLTKRIE LGGDDEFSHI ADYVNQIAYR FQHAVQNTHD
STSRLASSAE ENSVVSTQTQ RNVVDQQQQT QLIATAIHQF TATVREVAQS AAAAATTSEE
ANGAATNGQS VVDESISVIE TLSKEMDSAT EAMKLLSQHS DEIGSVVDVI QGISEQTNLL
ALNAAIEAAR AGEQGRGFAV VADEVRNLAK RTQDSTEEIQ KMIQRLQQGA RDSMVMMERG
TEQAKLSVDK SQQAGDALQQ IMASIEQINA LNAQIATASE QQSSVTEEIN QNIINISDIS
DQTAAGAEQS NVATQELANL AESMQQEIAH YRV
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