Gene PSPTO_5160 details

Gene Information

• Locus tag: PSPTO_5160
• ID: 1186845
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5869300
• End bp: 5871243
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637396479
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_794891
• Protein GI: 28872272
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.391343
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCCGAC TGATCAATCA CGCGCTCGGC AACATGAACG TCAGATTCAA ACTGTCCCTG 
GGTTTTGCCC TGGTGCTATT ACTAACCCTG ATCATCACAC TCACCGGCTG GCATGGTCTT 
TACACCATGA TCGACCGCTC CGAGTCGCTT TCGGACGTCT CACAGCTCAC CAGCCTGACC 
AAAGACCTGC GCGCTGACAG AATCACCGAC CGAGTGGAAA AGACCCCGGA GACCACAGCG 
CAAGTCATCA AAAAGCTCGA CGAAATGAAA ACCCACCTGA CATCGCTGCA CCGGCAGAGC 
ACGGAGCAGG CGACCATCAC CTTGCTCAAC GGGCAACTGC AGGCGGTGAG CGAACTGGAG 
AAATCCTTCG CCGAGATTCG CAGCAATCGA CAGAGCCGCA ACCAGATACG CCAGCGCCTG 
GATCAAAGGT CAGAGCAGGC TTTGCAGGCA GTCGCGCAGG TCGAAGCCGA AGTGCTCAAG 
AGCGTGAGCC AGGAGCAGGA CAGCAGCGAG CGCATGGAAG AATTCACCAA CATTTCACAA 
CTGAGGCAGC AGATCCAGGT CGCGCGTTAT CAGGTGCAGG CCTACACCTT CACCACCAAG 
GATGCGGATG AAACGGCCGC CATTACCGCT ATCGACGAAG CGCTCAAGGA AGTCGAGCAG 
ATCGCTCAGA CCCAGGCCGA CGACCCGCTT CAAGGACTGG TACCCGCGAC CGAGGCGCTG 
AAGGGTTATC GGGACAGCCT GAGCGAGTTC AAACAGATAC AGACCAAAGC CGAGGCTGAT 
CAGGAGTCGA TGGAAAGCCT GGGTGAAAAG CTGCTTGAGT CTGTGGCCGC GCTGACCCTT 
CTGCAAACCG CGCAACGTGA CAGCGAAGCT GCAAACTCCA GAACGATGCT GGCCAGTGTG 
GCGAGCCTGG CATTACTGAT CGGGTTGCTG GCGGCCTGGG TCATGACCCG ACAAATCACC 
GTTCCGCTGC AACAAACCCT GATTGCCGCA GCACGCATCG CTCAAGGCGA CCTGAGCCGG 
GATATGTCAG TAGCGCGTCG TGACGAGATG GGTCAGTTGC AGCGCAGTAT GCAGACCATG 
ACGCTTAGCC TGCGCGAGTT GATTGGCGGC ATCAGTGATG GCGTCACGCA GATCGCCAGC 
GCAGCCGAGC AGCTTTCAGC CGTCACTGAA CAGACCTGTT CAGGGGTGAA CAGCCAGAAG 
GACGAGACGG ATCTGGTGGC CACCGCCATG AATGAAATGG CCGCGACAGT GCAGGAAGTG 
GCGCGCAGTG CTCAGGAGGC ATCCCAGGCG GCTGTTCAGG CCGACCAACA GGCGCGCAGC 
GGTGATGAAG TGGTCGGACG GGCGATCACT CAGATCGAGC AACTGGCGCG CGAGATGGTC 
AATTCCACTC AGTCCATGAA TCAGCTCAAG CAGGAAAGCG GCAAGATCGT CGGCGTTCTT 
GATGTAATCA AGTCGGTTTC GCAGCAGACC AACCTGCTGG CCCTGAATGC GGCGATTGAA 
GCAGCCCGCG CGGGCGAAGC CGGGCGTGGC TTTGCGGTGG TCGCCGATGA GGTACGCAGC 
CTGGCGCAAC GAACCCAGAA GTCCACTGAG GAAATCGAGG AGTTGATTGC GGCGCTGCAA 
AGCGGCACGC AGCAGGTCGC GACCACGCTG GACAACAGCC GCACCTTGAC CGACAACACG 
GTCGAACTGA GCCGTCGCGC GGGCAGTGCA CTTGAGGACA TTACCCGCAC GGTTGCAACC 
ATCCAGCACA TGAACGAACA GATCGCCACC GCCAGCGAGG AACAAAGCGT GGTTGCCGAA 
CAGATCAACC GCAACGTCAT CAGCGTGCGC GACATCTCCG AACAGACTGC AGCAGCGAGC 
GAACAAACCG CAGCATCCAG CGTCGAACTG GCCCGATTGG GCACACACTT GCAGGGGCTG 
GTGGGGAAAT TCAAGGTGAG TTGA 

 

Protein sequence

MFRLINHALG NMNVRFKLSL GFALVLLLTL IITLTGWHGL YTMIDRSESL SDVSQLTSLT 
KDLRADRITD RVEKTPETTA QVIKKLDEMK THLTSLHRQS TEQATITLLN GQLQAVSELE 
KSFAEIRSNR QSRNQIRQRL DQRSEQALQA VAQVEAEVLK SVSQEQDSSE RMEEFTNISQ 
LRQQIQVARY QVQAYTFTTK DADETAAITA IDEALKEVEQ IAQTQADDPL QGLVPATEAL 
KGYRDSLSEF KQIQTKAEAD QESMESLGEK LLESVAALTL LQTAQRDSEA ANSRTMLASV 
ASLALLIGLL AAWVMTRQIT VPLQQTLIAA ARIAQGDLSR DMSVARRDEM GQLQRSMQTM 
TLSLRELIGG ISDGVTQIAS AAEQLSAVTE QTCSGVNSQK DETDLVATAM NEMAATVQEV 
ARSAQEASQA AVQADQQARS GDEVVGRAIT QIEQLAREMV NSTQSMNQLK QESGKIVGVL 
DVIKSVSQQT NLLALNAAIE AARAGEAGRG FAVVADEVRS LAQRTQKSTE EIEELIAALQ 
SGTQQVATTL DNSRTLTDNT VELSRRAGSA LEDITRTVAT IQHMNEQIAT ASEEQSVVAE 
QINRNVISVR DISEQTAAAS EQTAASSVEL ARLGTHLQGL VGKFKVS