| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3502 |
|---|
| Symbol | |
|---|
| ID | 5612608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4268478 |
|---|
| End bp | 4270340 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934455 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001475234 |
|---|
| Protein GI | 157376634 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.666992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.2901 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATTC GTCATAAATT ACTGCTCAGT GCCGCAGTGT CTATTCTTTC CATATTTGCC
ATGTTTGGTC TGCAAGTATA TTCAAGTGGT GTTCAGGATG ATCTGTCTCA TACTGCCCAA
GGTGTTATTG AATTAGAGAA AGAGGTGCTG AGTCTTCGAA AAGACGAAAA GGATTTCTTT
GCCCGATTGG AGCTTAGTTA TTTGGATAAA CACCAGTCAA ATTCTGATGA TATTGCAAAA
GTGATTAACT CGTTAAGAGA GAGCTTTGTT ATTTATGAGA TATCGACCGA TGCCCTGCAG
AGTTTCGAGA AGAGTTTGAG TCACTATGAA CAATCGTTCA AAAAGGTGGT TCAACTGCAG
CAGGAGATTG GACTTACCCC CAAAACAGGC CTCTATGGCA CTCTTAGAGA AGCCGTTCGT
AATGTTGAAA CTCTGGTTAA AAAGTATGAT GAGCCAGAAC TGATGGTGGT AATGCTACAG
CTCAGGCGTA ATGAGAAAGA CTTTATGTTG CGCCGGAACA TGAGTTATGT AGACAAATTT
GAAGGCAATA TTGATAAATT CGGGCAGACG TTGGCCGAGT CCGGGCTCGA TTATAGTGTC
AAAAATGAAA CCATGACGCT CATCTCAAGT TACCAGAAAG ATTTCGCAAC CTTAGTGGCT
AAGGAGCAAG CCTTAGGGTT AACCAAAAAT GACGGTGGAA TGGCGGAACT GCGTGATGCC
ATTGCTACGG CTGAGGCGGA CTCTGAGCGA CTGAAAGAGC AAGCAGGTGC AGCGATCCAT
GCTGCTGAAG AGTCGGCCCT TACGGTGGGA GTTGTTGTAT TTATCCTGAT CGCTATCATT
CTTTGTGCTT TCACCTTCTT TATTATACGA AGCATTATGG AGCCAGTAAC ACGTATCACG
CTTGCTATCT CAAACATCGA AAAGAATAAG GATTTGACGG TCCGCTGTGA TGCAACCTCA
GACGATGAAC TTGGGCAGAT AGCCAAACAC TTTAATCTTA TGGTTGAGAG CTTCCAGAAA
CTGATTGAAG AAGTTATAGA TTCGGTTCAA ATCATGAATC ACTCCTGTTC TGAGCTCTCA
TTAAATGCCA CTAAAGCATC TGAAGGGGTG GGGCAGCAGC TCAATGAAAC CGATATGGTG
GCTACCGCGA TAACTGAAAT GGGAGCGACT ATCGATGAGA TTGCAAAAAA TACCGAGTTA
GCCGCTGACA GAGCGGGAAA TACCCATGAC AATGCTCTAA AAGGTCAGGC TGGTGTCGAG
CAGACTATCG AGAAGATTCA ATCATTAGCT GAACAGTTAA ATGGCTCAGC GCAAGTGGTC
GGTGAGTTGG AAAAGGACAG TGAGACGATA GGAAGCGTAC TGGATGTGAT TAGAGGGATC
GCCGAGCAGA CGAATCTTCT TGCGCTCAAT GCCGCTATCG AAGCGGCCCG TGCCGGTGAG
CAGGGACGTG GTTTTGCTGT CGTCGCCGAT GAGGTGCGTA GTCTGGCTAT GAGGACTCAA
GAGTCGACCG AAGAGATCGC AGGGATCATT CAAACACTGC AGGCGAGAAC CCGTTCTATC
GTTCAGTTGA TGGAAGCGAC GCAGAGGCAG GGAGGGGAAA GTGCAGAGCA GGCCGCAACA
GCGGGTACTC TACTCGAACA GATAAACGTC GATGTGACGA ATATCATGGA CATGAGCACT
CAAATTGCGG CTGCAATCGA AGAGCAGAGT ATGGTTGCCT CTGAGGTTAA TAAGAACGTC
GTGGTTATCA GGGATATTGC TCAGGACTCG GCGACAGCTG CTGATGAGAA TGCACAGGCG
ACGAGTGAAG TTCAGTCTCG TGCCGAATCA CTTCATCAAG CAGTGAGCTT GTTTAAGATC
TAA
|
|---|
| Protein sequence | MLIRHKLLLS AAVSILSIFA MFGLQVYSSG VQDDLSHTAQ GVIELEKEVL SLRKDEKDFF
ARLELSYLDK HQSNSDDIAK VINSLRESFV IYEISTDALQ SFEKSLSHYE QSFKKVVQLQ
QEIGLTPKTG LYGTLREAVR NVETLVKKYD EPELMVVMLQ LRRNEKDFML RRNMSYVDKF
EGNIDKFGQT LAESGLDYSV KNETMTLISS YQKDFATLVA KEQALGLTKN DGGMAELRDA
IATAEADSER LKEQAGAAIH AAEESALTVG VVVFILIAII LCAFTFFIIR SIMEPVTRIT
LAISNIEKNK DLTVRCDATS DDELGQIAKH FNLMVESFQK LIEEVIDSVQ IMNHSCSELS
LNATKASEGV GQQLNETDMV ATAITEMGAT IDEIAKNTEL AADRAGNTHD NALKGQAGVE
QTIEKIQSLA EQLNGSAQVV GELEKDSETI GSVLDVIRGI AEQTNLLALN AAIEAARAGE
QGRGFAVVAD EVRSLAMRTQ ESTEEIAGII QTLQARTRSI VQLMEATQRQ GGESAEQAAT
AGTLLEQINV DVTNIMDMST QIAAAIEEQS MVASEVNKNV VVIRDIAQDS ATAADENAQA
TSEVQSRAES LHQAVSLFKI
|
|---|
| |