More than 300 homologs were found in PanDaTox collection
for query gene Sfri_0216 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009997  Sbal195_4340  methyl-accepting chemotaxis sensory transducer  58.58 
 
 
660 aa  663    Shewanella baltica OS195  Bacteria  normal  0.751262  normal  0.782794 
 
 
-
 
NC_004347  SO_4635  methyl-accepting chemotaxis protein  58.27 
 
 
658 aa  644    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3540  chemotaxis sensory transducer  54.77 
 
 
668 aa  654    Shewanella denitrificans OS217  Bacteria  normal  0.502982  n/a   
 
 
-
 
NC_009438  Sputcn32_3848  methyl-accepting chemotaxis sensory transducer  57.34 
 
 
660 aa  635    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3813  methyl-accepting chemotaxis sensory transducer  57.96 
 
 
658 aa  640    Shewanella sp. MR-4  Bacteria  normal  normal  0.0320682 
 
 
-
 
NC_008322  Shewmr7_3904  methyl-accepting chemotaxis sensory transducer  58.27 
 
 
658 aa  645    Shewanella sp. MR-7  Bacteria  normal  0.202773  normal  0.313356 
 
 
-
 
NC_008345  Sfri_0216  methyl-accepting chemotaxis sensory transducer  100 
 
 
648 aa  1301    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_4019  methyl-accepting chemotaxis sensory transducer  58.27 
 
 
658 aa  644    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_4136  methyl-accepting chemotaxis sensory transducer  58.73 
 
 
660 aa  664    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4208  methyl-accepting chemotaxis sensory transducer  58.73 
 
 
660 aa  662    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0148  methyl-accepting chemotaxis sensory transducer  54.56 
 
 
651 aa  599  1e-170  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_4019  methyl-accepting chemotaxis sensory transducer  52.78 
 
 
646 aa  560  1e-158  Shewanella pealeana ATCC 700345  Bacteria  normal  0.723587  n/a   
 
 
-
 
NC_009092  Shew_3639  methyl-accepting chemotaxis sensory transducer  52.54 
 
 
652 aa  544  1e-153  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3512  putative methyl-accepting chemotaxis sensory transducer  45.52 
 
 
647 aa  458  1e-127  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0139  methyl-accepting chemotaxis protein  32.19 
 
 
650 aa  216  9e-55  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4309  methyl-accepting chemotaxis sensory transducer  29.69 
 
 
628 aa  152  2e-35  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00619864  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  32.14 
 
 
620 aa  131  5.0000000000000004e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  31.62 
 
 
620 aa  129  2.0000000000000002e-28  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  31.62 
 
 
620 aa  129  2.0000000000000002e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  34.36 
 
 
674 aa  128  4.0000000000000003e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_013512  Sdel_1931  chemotaxis sensory transducer  28.57 
 
 
621 aa  127  5e-28  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  31.62 
 
 
620 aa  127  7e-28  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_009656  PSPA7_5564  putative chemotaxis transducer  26.64 
 
 
657 aa  125  2e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  31.4 
 
 
620 aa  126  2e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  31.73 
 
 
620 aa  124  4e-27  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  31.46 
 
 
620 aa  124  5e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009665  Shew185_1142  methyl-accepting chemotaxis sensory transducer  33.02 
 
 
495 aa  124  6e-27  Shewanella baltica OS185  Bacteria  normal  0.0413666  n/a   
 
 
-
 
NC_011663  Sbal223_3213  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
495 aa  124  7e-27  Shewanella baltica OS223  Bacteria  normal  0.023485  normal 
 
 
-
 
NC_009784  VIBHAR_05691  histidine kinase  32.95 
 
 
538 aa  124  7e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010424  Daud_0680  methyl-accepting chemotaxis sensory transducer  31.27 
 
 
679 aa  122  9.999999999999999e-27  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1176  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
495 aa  123  9.999999999999999e-27  Shewanella baltica OS195  Bacteria  hitchhiker  0.00652986  normal 
 
 
-
 
NC_009052  Sbal_1082  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
495 aa  123  9.999999999999999e-27  Shewanella baltica OS155  Bacteria  hitchhiker  0.000101058  n/a   
 
 
-
 
NC_010506  Swoo_4441  methyl-accepting chemotaxis sensory transducer  30.86 
 
 
654 aa  123  9.999999999999999e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  30.11 
 
 
545 aa  122  3e-26  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_008740  Maqu_3099  methyl-accepting chemotaxis sensory transducer  33.69 
 
 
672 aa  122  3e-26  Marinobacter aquaeolei VT8  Bacteria  normal  0.500846  n/a   
 
 
-
 
NC_008463  PA14_30820  putative methyl-accepting chemotaxis transducer  36.02 
 
 
535 aa  121  3.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142633  hitchhiker  0.0000000000042709 
 
 
-
 
NC_009253  Dred_2857  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
520 aa  120  6e-26  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.000607785  n/a   
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  33.21 
 
 
620 aa  120  9e-26  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  33.09 
 
 
620 aa  120  9e-26  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_009997  Sbal195_3579  methyl-accepting chemotaxis sensory transducer  32.93 
 
 
543 aa  120  9.999999999999999e-26  Shewanella baltica OS195  Bacteria  normal  normal  0.0986947 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  34.4 
 
 
620 aa  120  9.999999999999999e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_013512  Sdel_0262  chemotaxis sensory transducer  33.12 
 
 
650 aa  119  9.999999999999999e-26  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3382  methyl-accepting chemotaxis sensory transducer  33.83 
 
 
543 aa  120  9.999999999999999e-26  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3455  methyl-accepting chemotaxis sensory transducer  33.83 
 
 
543 aa  120  9.999999999999999e-26  Shewanella baltica OS185  Bacteria  normal  0.0121993  n/a   
 
 
-
 
NC_009457  VC0395_A1023  methyl-accepting chemotaxis protein  33.12 
 
 
578 aa  120  9.999999999999999e-26  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  33.09 
 
 
620 aa  120  9.999999999999999e-26  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  28.99 
 
 
533 aa  119  9.999999999999999e-26  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_009831  Ssed_2783  methyl-accepting chemotaxisprotein  31.95 
 
 
690 aa  119  1.9999999999999998e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.468562 
 
 
-
 
NC_004347  SO_3642  methyl-accepting chemotaxis protein  37.07 
 
 
673 aa  119  1.9999999999999998e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_2149  methyl-accepting chemotaxis sensory transducer  33.1 
 
 
541 aa  119  1.9999999999999998e-25  Pseudomonas putida F1  Bacteria  normal  0.608007  normal 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  34.82 
 
 
560 aa  119  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  33.07 
 
 
620 aa  119  1.9999999999999998e-25  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  32.12 
 
 
620 aa  119  1.9999999999999998e-25  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009052  Sbal_0908  methyl-accepting chemotaxis sensory transducer  33.83 
 
 
543 aa  119  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  normal  0.073872  n/a   
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  30.07 
 
 
648 aa  118  3e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_008700  Sama_0942  putative methyl-accepting chemotaxis sensory transducer  34.5 
 
 
495 aa  118  3e-25  Shewanella amazonensis SB2B  Bacteria  decreased coverage  0.000202207  normal 
 
 
-
 
NC_008577  Shewana3_0923  methyl-accepting chemotaxis sensory transducer  33.83 
 
 
543 aa  118  3e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  29.52 
 
 
621 aa  118  3.9999999999999997e-25  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  33.56 
 
 
674 aa  118  3.9999999999999997e-25  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_007492  Pfl01_0622  chemotaxis sensory transducer  27.43 
 
 
648 aa  118  3.9999999999999997e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0924  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
543 aa  118  3.9999999999999997e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1826  chemotaxis sensory transducer  31.85 
 
 
650 aa  117  5e-25  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0717  methyl-accepting chemotaxis sensory transducer  27.32 
 
 
654 aa  117  5e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  29.41 
 
 
663 aa  117  5e-25  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3924  methyl-accepting chemotaxis sensory transducer  32.82 
 
 
527 aa  117  5e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0959  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
543 aa  117  6e-25  Shewanella sp. MR-7  Bacteria  normal  0.656726  normal  0.666936 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  31.51 
 
 
554 aa  117  6.9999999999999995e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1016  methyl-accepting chemotaxis sensory transducer  34.14 
 
 
528 aa  117  8.999999999999998e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0086081  normal  0.258616 
 
 
-
 
NC_009456  VC0395_0210  methyl-accepting chemotaxis protein  30.36 
 
 
543 aa  117  8.999999999999998e-25  Vibrio cholerae O395  Bacteria  decreased coverage  0.000000000000824359  n/a   
 
 
-
 
NC_009831  Ssed_1066  methyl-accepting chemotaxis sensory transducer  35.38 
 
 
705 aa  117  8.999999999999998e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1073  chemotaxis sensory transducer  32.94 
 
 
633 aa  116  1.0000000000000001e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.00919731  n/a   
 
 
-
 
NC_002947  PP_2643  methyl-accepting chemotaxis sensory transducer  32.75 
 
 
550 aa  116  1.0000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  0.0855376  normal 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  29.67 
 
 
630 aa  117  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1148  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.05 
 
 
650 aa  116  1.0000000000000001e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.605213  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  33.23 
 
 
637 aa  116  1.0000000000000001e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009438  Sputcn32_0925  methyl-accepting chemotaxis sensory transducer  32.46 
 
 
543 aa  116  2.0000000000000002e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  26.78 
 
 
559 aa  115  2.0000000000000002e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0375  methyl-accepting chemotaxis sensory transducer  29.71 
 
 
674 aa  115  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  normal  0.129925  n/a   
 
 
-
 
NC_009512  Pput_0601  methyl-accepting chemotaxis sensory transducer  27.71 
 
 
653 aa  115  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1930  chemotaxis sensory transducer  29.33 
 
 
625 aa  115  2.0000000000000002e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0902  methyl-accepting chemotaxis sensory transducer  35.55 
 
 
673 aa  115  2.0000000000000002e-24  Shewanella sp. MR-4  Bacteria  normal  normal  0.73728 
 
 
-
 
NC_008322  Shewmr7_3799  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
527 aa  115  2.0000000000000002e-24  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1770  methyl-accepting chemotaxis sensory transducer  30.43 
 
 
538 aa  116  2.0000000000000002e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  37.39 
 
 
545 aa  115  2.0000000000000002e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_011138  MADE_03718  putative chemotaxis sensory protein  33.91 
 
 
540 aa  115  2.0000000000000002e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  32.58 
 
 
628 aa  115  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.58 
 
 
628 aa  115  2.0000000000000002e-24  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  35.55 
 
 
673 aa  115  2.0000000000000002e-24  Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  29.57 
 
 
549 aa  115  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_013512  Sdel_0819  chemotaxis sensory transducer  29.58 
 
 
627 aa  115  3e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.113637  n/a   
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  29.21 
 
 
547 aa  115  3e-24  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  29.8 
 
 
533 aa  115  3e-24  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.8 
 
 
533 aa  115  4.0000000000000004e-24  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
544 aa  115  4.0000000000000004e-24  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01518  hypothetical protein  31.6 
 
 
674 aa  114  4.0000000000000004e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013512  Sdel_1432  chemotaxis sensory transducer  29.67 
 
 
546 aa  114  4.0000000000000004e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.138665  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  33.72 
 
 
545 aa  115  4.0000000000000004e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011313  VSAL_II0756  methyl-accepting chemotaxis protein  31.7 
 
 
558 aa  114  5e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1011  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
675 aa  114  5e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.547128  hitchhiker  0.00024543 
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  32.81 
 
 
650 aa  114  5e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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