Gene Sden_3540 details

Gene Information

• Locus tag: Sden_3540
• ID: 4020094
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 4251760
• End bp: 4253766
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637957598
• Product: chemotaxis sensory transducer
• Protein accession: YP_564538
• Protein GI: 91794887
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.502982
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAT CGACCTTATC GTTAACCGCT TCTGCCCTAT TACTTTTGCT TGCCAGCACC 
TTGGCGGCGA CCCTCATTTG GAGCAACACC CAAAGACAAG AAGATGAGCA ACTCACCCAA 
GAATTAACCC AGATACAAAC AATATTTCAA TTCAACATTC GACGTAATAT CGACCAATAT 
TTACAAACAG GTTTTAGCAA TCACTTAAGC AGTGCCAGTA AAGAGCTCAA GTCCATCGCT 
ATTGATATCG ATGTATTAAA GCAAGCACAT CCACGACTTA ATACCCGGGG AGTCAGTGAC 
TTTATCGGCA ATTTTGTTAA GGAACTCGAT AGCAAATATC GCTCTGCGGG TAAGCTTGCA 
GGCAATCCAA GGCAACTCCT GTCCCATGCT GAATCTGAAA TGCTGGCCTA TAACCGTAGC 
CTGAGCTATT ATGCACTGCA ATCTGTGTTA GCCAATTCTG CATTAACCAA TTCTGTATTA 
ACCCATAGTG ACGCTCTAAA TAACACGATC CAGCATGCCA AAAACTATCA AAGCCTTAAC 
CAAGACTTAC CTCAGCTCGT CTACCAATTA TCACAATTAA CCACGGCGAT TATTCTGGAA 
AACGATCCCA GTCGCCAAGC CAGCTTAGAT AACAGCTTGC TTGAACTTGA GCAATGGCAT 
CAAGCACTGG CTAAACTGCC CCTATTGGGT ATCTATAAAG TTGAAGAGCT GGATGAATTT 
GCTCTGGGTG ATGATGAGCC AGAGCGAGTT GAAATGGGTG AGCAACTCAA GGCAGAACTC 
CTTAGTTTAG CCCAGCGCTA CCCCAAAGAA ATTGCTAATA CCCAAGCTCA ACAGGCTGAA 
AATGTCAAAG TACAGCAGGC ATTAATGCTG GCCACTGCTG AGTTAGAACA ACAGCTTACA 
CAACTGGCTG AAGTTCAACA TACCCTGAGC CAAGCCCTTA AGTTAAAACT ACAGTGGCTG 
TTATATAGTA TGGTCGCCAT CTTAGCCCTG TTTGCTCTTT GTTATTTAAT CTTGCAACAG 
CTTAAGGTCG TGAAGCCTCT CAAACGCCTA AACCAAGCCT TCTTTCAATT GACTGAAACC 
AATCAGAGAG AAAGAATCAC CATCACTAGC CGCTGTGAAA CAGGTCAAAT TGCGGGTTAT 
TTCAATAACT TGTTACACAG GTTTGAGCAA GAAGATGAGC AAAGGGCCAA GAACCTGACG 
CAAATTTCTC ATTCACTAAG CCAACTGGTT ACCCGCATTG GTGGTATTTC TACAGATACT 
AAGCAGACTC AACACATAGT GCAAACCGCC CAAGATCAGA CCCATACCCT GAAGCATTTA 
TCTCAGGAGG TCACCCAGTC TTCATCTTTG CTCGCCAATA GCGCACGGCA AACCATGGAG 
CAGATGCAGT CTAGTCAAAA TCAATCTCAG GCAGTATTAA GCGCCACAGA AAGAACCTTA 
GACTCTATAG GTCATTGCAA TCGATCCTTG GGGCAACTTA GTGCCTCTGT GACCGACGCA 
GAAAAGATAG TCCATGTGAT CAGTAATATA GCCGAACAAA CTAATTTATT GGCCTTGAAC 
GCGGCCATAG AGGCCGCCAG AGCTGGCGAG CAAGGACGAG GCTTTGCCGT GGTTGCCGAT 
GAAGTCAGGA GCCTCTCCCA GCGAACCCAA ACATCTCTGC AAGAAATCAC CGCCATTCTT 
GGACGCTTAA GTCATTCTAA TCATGAACTC ACTCAGACTG TCTCTGGCAT AGAAGAAGCG 
ACCCAGAGCC AAAAGTCTCG CGCCCTAAGC CTGCTAGATG CCGCTAAACT AGTCCAATCT 
CAGGCAGAGG CCATGGCGCG CACTGCCGAG CAAGGCACAG CCCATGCCAT AGAGCAGAAC 
AATTATTTAG ATGCCTTCAT CTTGGCCATG AACAGCTTAA TGGAGCAGGC CCAAGGCACC 
TTCAGCCAAA GCCAGACCAT AGCCCAAGAG GTCACAGACA GGGTGCAAGA GATAGAGTTA 
AGCCTTGGGA TAGACGCTGC GGCTTAA 

 

Protein sequence

MKISTLSLTA SALLLLLAST LAATLIWSNT QRQEDEQLTQ ELTQIQTIFQ FNIRRNIDQY 
LQTGFSNHLS SASKELKSIA IDIDVLKQAH PRLNTRGVSD FIGNFVKELD SKYRSAGKLA 
GNPRQLLSHA ESEMLAYNRS LSYYALQSVL ANSALTNSVL THSDALNNTI QHAKNYQSLN 
QDLPQLVYQL SQLTTAIILE NDPSRQASLD NSLLELEQWH QALAKLPLLG IYKVEELDEF 
ALGDDEPERV EMGEQLKAEL LSLAQRYPKE IANTQAQQAE NVKVQQALML ATAELEQQLT 
QLAEVQHTLS QALKLKLQWL LYSMVAILAL FALCYLILQQ LKVVKPLKRL NQAFFQLTET 
NQRERITITS RCETGQIAGY FNNLLHRFEQ EDEQRAKNLT QISHSLSQLV TRIGGISTDT 
KQTQHIVQTA QDQTHTLKHL SQEVTQSSSL LANSARQTME QMQSSQNQSQ AVLSATERTL 
DSIGHCNRSL GQLSASVTDA EKIVHVISNI AEQTNLLALN AAIEAARAGE QGRGFAVVAD 
EVRSLSQRTQ TSLQEITAIL GRLSHSNHEL TQTVSGIEEA TQSQKSRALS LLDAAKLVQS 
QAEAMARTAE QGTAHAIEQN NYLDAFILAM NSLMEQAQGT FSQSQTIAQE VTDRVQEIEL 
SLGIDAAA