| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3848 |
|---|
| Symbol | |
|---|
| ID | 5081230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4465138 |
|---|
| End bp | 4467120 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640501060 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001185353 |
|---|
| Protein GI | 146294929 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTT CAACGCTATC ACTTTCTGCC TCTGCCCTAT TGCTATTACT CGCGGGATTA
TTAGCGGCAG TAGTGCTATG GAGCAGCACT CAGAGACAGC AAATTGAGCA ACAAACTCAT
TCACTACAAA ACATTCAACA GGATTTCCTT GTCGGTGTCC GCCGCGATCT CGATGGCTAT
TTAGTCACTG GTAATGCCGG TCAACTTGAG CAAGCCAAAA CCAAACTCAT CACCATTAAG
GATCAGCTCG CGCAGTTAAA TCTCGCCACT GTGGGGGCGA CAGATAATGA GTTGCAGATA
GGCTTAAGCA GCTTCATCCA AGATTTAGAG ACTAAGTACC TCGCCGCAGG CAAACTCGCG
GGAGATCCTC GGAAATTGCT TGCCCATGCG GAATCAGAAA TGATGGGGTA CAACCGCCGC
CTGAGCCAGT ATGCAGATAA AGGAGCAACA ATTAATGCCC TTGTCGCCGA GCAATATCTG
CAACTTAGCC GTGATTTACC TTCAATTGTG TATGAACTCT CCCAACTTAC CGAAGGTTAT
TTGATCGGGA AAAATCAGAA ACTAAAGGGA ATTTTGGATA GCACAATAAA AGAGTTGGAT
ACTTGGCGGG AGGCCCTAAA TGCTCTGCCA TTGATTGGCA TATATGAAAT TCAAGAAGCC
GATGAATTTG CCCTTGGTGG TAGCGAGCCA GAACAAATTG AAATCGGTGA GAATGACCGC
AGTGAGCTAT TAAGCCTGAG CAATAGGTAC AGTAAAGAAG TCGCCAACAC CCACCAACAG
CTGCAAACCA ATCAAGAAAT GCAGGAACAG CTTATCCAAG CCATTAGCAA AGTGGAACAA
CAGCTTATCG CTCTAGGTGA TGCCCAAGCC GCAAAAAATC AGCAACTCAA ATCTGAGCTA
CAACTGATCC TCTATACCAT GGTGTCCATC ATGGCACTAT TCGCCATAGG CTATTTAATC
CTGCAACAAA ATCGCGTTGT GAAACCGCTT AAACGCCTTA ATCAAGCCTT TATGAAATTA
AGCGAAGCGA ACAGTCGTGA GAGATTAGAT ATCAATAGAC GTTGTGAAAC AGGGCAAATC
GCGGGACACT TTAATCAATT ATTACAACGC TTTGAATTGG AAGATGAAAC ACAACGCCAG
CAGATAACTA AAGTTTCACA GTCCTTGCGT CAACTGGTTG CACGGATCAA CCAACTCTCT
GTGCATACCG AAAATACACA GACGATAGTG ACAGAAACTC AAACACAAAC TGAACATATC
CGCAGCCTCG CCAATGAAGT CAGCCATACC TCAGCCCTCG TGGAAAATAG CGCCGCAGAA
ACAATGCGCC AAATGCAATC GAGCCAAACT GAAGCTGAAG CGGTACTCAG TGCAACCGAG
CAGACTCAAA CTGCGGTCGG GCTATGCCAT GCCTCCCTCG AAAGTTTAAA TACCTCTGTC
ACTGATGTAT CAAAAATCAT TGATGTGATT AGTAATATTG CTGAACAAAC TAATTTACTC
GCCCTTAATG CTGCCATTGA AGCGGCAAGG GCTGGTGAAC AAGGCCGCGG TTTTGCCGTC
GTCGCCGACG AAGTACGTAA TTTAAGCCAA CGCACTCAAA CATCCTTGAA CGAAATCGTG
AAGATTCTGC AGCAACTGAC CCAATCGAAT CATGCGCTCA GTGAGAGTGT CGATGGCATA
GCGCAGGCCA CCAGCAGCCA AAAACTGCGG GCTCAGAGCC TGTGGCAAGT GGCGCAAACA
GTACAAAACC AAGCCAGTGA AATGGCTAAT ACCGCCAAAC AAGGCTCGCT CAACGCCAAA
GAGCAAGTCG ATTATCTCGA TGAATTTGTA CGTACTATGG ATAATTTAAG GCAACAGGCG
CAGACCAGTT CACAACAGAG TGACGTCATC GCCCAAGAAG TACAGCAGAG TGTAGAAGAT
ATTGAGACTA GCCTAGGAAT AGCCAATCAA ACTAAAGCAC CACCCCATTT GCGAGCCGCT
TAA
|
|---|
| Protein sequence | MKISTLSLSA SALLLLLAGL LAAVVLWSST QRQQIEQQTH SLQNIQQDFL VGVRRDLDGY
LVTGNAGQLE QAKTKLITIK DQLAQLNLAT VGATDNELQI GLSSFIQDLE TKYLAAGKLA
GDPRKLLAHA ESEMMGYNRR LSQYADKGAT INALVAEQYL QLSRDLPSIV YELSQLTEGY
LIGKNQKLKG ILDSTIKELD TWREALNALP LIGIYEIQEA DEFALGGSEP EQIEIGENDR
SELLSLSNRY SKEVANTHQQ LQTNQEMQEQ LIQAISKVEQ QLIALGDAQA AKNQQLKSEL
QLILYTMVSI MALFAIGYLI LQQNRVVKPL KRLNQAFMKL SEANSRERLD INRRCETGQI
AGHFNQLLQR FELEDETQRQ QITKVSQSLR QLVARINQLS VHTENTQTIV TETQTQTEHI
RSLANEVSHT SALVENSAAE TMRQMQSSQT EAEAVLSATE QTQTAVGLCH ASLESLNTSV
TDVSKIIDVI SNIAEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRNLSQ RTQTSLNEIV
KILQQLTQSN HALSESVDGI AQATSSQKLR AQSLWQVAQT VQNQASEMAN TAKQGSLNAK
EQVDYLDEFV RTMDNLRQQA QTSSQQSDVI AQEVQQSVED IETSLGIANQ TKAPPHLRAA
|
|---|
| |