Gene CPS_0139 details

Gene Information

• Locus tag: CPS_0139
• ID: 3521378
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 147284
• End bp: 149236
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637282606
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_266907
• Protein GI: 71280909
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCGTTT CTAGCTTTTC TCGTTTGTCT GTAACGGCAA TCAGTATTTT TACCGCTATT 
TTTATGGCAA CCATGTATCA CGTGGGTGAG TCGTTAAGTG AAAGTAGGGC ACAATATAAG 
GGCTATCAAG CACTTATTTC CTTAACAACG GTTGAGTTTA ATCGAACTAT TGTTGAGTAT 
TTACAAACTG GTGATGCGGC TTTGCTAAAC AAGGCGCAAA AACAACTTAC GGGTATTGTT 
AAAAAAACGT ATAGCTTAAA TATCGATAAA CTCTCTAAGC AAATAGACTC GCAAGCACAG 
GCACTCGCCA ATAATATTGA TACCAAATTT CGCGCCATGG GTAAACTCAG TGGTGACCCT 
TTAGTGCTGT TACGTAACGG CGAACAAGAA ATGATCGCGC TTAATAATGA TTTATCAAAC 
CATGTACAAA ATACTCAAGT ACTGTCAGTA AAAGAGCAGT TTAACTACCT CGTGACAATA 
CAGACCATAG GGAAGTTACT TGCCGATTTA GTCAGTGCTA GAGAAGCTAT TTTTACCCAG 
GCACAGCCAA ATATTCAATC GGTAAATCCT CTTTTAAAAG AGTTAAAAGG CCTAGGTAGT 
TTTTTGTCAC TGCAAAAAGC GTTAGCTATT TATGAAGAGA GTGATGACGA CTTGTTTGAT 
GACAGTGAAA ATTTACTCGG TGATGATGAG GAAAAGCAAG ATCTAAGCCT TGAAGCTATT 
AATGAATTAC AGTCATTATT TAATCGTTAT CAACGAGAAT TAGAAAATAC TTTAGCTCAG 
CAGCAACAAC GAAAAATGGG TTTTGCGCTG TTGGCTAAAC AAGTGGGCAA TATTGAAAAA 
GCCATCATGC AAGGTGAAGC AGAAATTTCA CAACAGCAAG AAAAAATAAA TGAGCAGCTT 
TATATTATTG TCATCGGACT ACTTATCTTT TTGGTGGTAT TTTTATTAGC AAATTACTGG 
TTGCAGCGCA GTGTTATTCT GCAACCGTTA CGTAACTTAC GTGATAGCTT TGTACAATTG 
GTGGAGCAGG GCAAAGTAGA CAACATTATT AATATTGATA ACAGAACAGA ATTTGGTGAA 
ATATCTACTA GTTTCAATCA CATGGTTAAT AAGCTAGCGC AAGATGATAA AGACAAAGCA 
CAGCAATTGG ACTTAGTCGC CAAAGCCTTA ACCACCATGG AAAGCCAAGT CAAAAGCATT 
TATCAGTCAT CGCATACCAC CAGCGAGCAT GTTCAAGGAG CGAGAAAAAT TATGGAGGCC 
TTAGGTGAGG CAACCGAAAC AGTGAATACC CTATCAGGGC AAGTCGTTAA CAATGCTCAG 
GCAACCAAAC AAGCAATGGA AGTAAGTCAG CATCATGTGT CACAAGTGCT GGCAGCAAGC 
GAATCTACTA ATTTGGCAGC AAAGGAAAGC AAAGGTGCCA TTACTTCACT ATTTCATTCG 
GTTGAATCGG TTACCTCTAT CGTTGATGTG ATTAGCGCTA TTGCGGATCA AACTAATTTG 
TTGGCGCTTA ATGCTGCCAT TGAAGCGGCA AGGGCAGGTG AACATGGCCG CGGCTTCTCT 
GTCGTTGCCG ATGAAGTCCG CCAACTTGCG GGTAAAACGC AGCAATCGCT CAAACAAATT 
TCAGCACGCT TAACTCAATT ACAAAGTGCG AGTAATTCTA TTGAAGGTAT TATTAACGAC 
ATAGAAAAAG CATCGAATAA TCAACGTATT ATTGCTGATG AATTGCAAGA AACCGCGTTA 
GCGGTAACAG GGCAGGCGCA AGTTTCTGCA ACGGTTGCTC AAGATACTCT GGAGCAAATC 
ACCTTGCAAC GCACACACTT TATCGCCTTT GAGCAAGCCA TGGCCAATGT CGACAAAGAA 
GTCAGCGACT CGCAGCAATT ATCGAATGTG ATTTCTGTTG ATGTCAGTAA TCAGGTAAAT 
GATATCGGTC TTACACTTAA AAAAGCGTCT TAA 

 

Protein sequence

MRVSSFSRLS VTAISIFTAI FMATMYHVGE SLSESRAQYK GYQALISLTT VEFNRTIVEY 
LQTGDAALLN KAQKQLTGIV KKTYSLNIDK LSKQIDSQAQ ALANNIDTKF RAMGKLSGDP 
LVLLRNGEQE MIALNNDLSN HVQNTQVLSV KEQFNYLVTI QTIGKLLADL VSAREAIFTQ 
AQPNIQSVNP LLKELKGLGS FLSLQKALAI YEESDDDLFD DSENLLGDDE EKQDLSLEAI 
NELQSLFNRY QRELENTLAQ QQQRKMGFAL LAKQVGNIEK AIMQGEAEIS QQQEKINEQL 
YIIVIGLLIF LVVFLLANYW LQRSVILQPL RNLRDSFVQL VEQGKVDNII NIDNRTEFGE 
ISTSFNHMVN KLAQDDKDKA QQLDLVAKAL TTMESQVKSI YQSSHTTSEH VQGARKIMEA 
LGEATETVNT LSGQVVNNAQ ATKQAMEVSQ HHVSQVLAAS ESTNLAAKES KGAITSLFHS 
VESVTSIVDV ISAIADQTNL LALNAAIEAA RAGEHGRGFS VVADEVRQLA GKTQQSLKQI 
SARLTQLQSA SNSIEGIIND IEKASNNQRI IADELQETAL AVTGQAQVSA TVAQDTLEQI 
TLQRTHFIAF EQAMANVDKE VSDSQQLSNV ISVDVSNQVN DIGLTLKKAS