Gene VC0395_A1023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1023 
Symbol 
ID5135352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1064371 
End bp1066107 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content45% 
IMG OID640532481 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001216969 
Protein GI147675234 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCAAC TCTCGTTTAA AAACAAGATA ATTGCCCTGA TCATCGCGAT TATCTCGCTG 
ACCATCATCA CCTCGTATTT TAGTGTTAAC TATTTTATCA GCGATTACAT CAAACAGGCG
GATAGCCAAA ACATCACGCA TAACATTGAT TTGATGCAAC GTAAGCTTGA AAACGAACTG
AACAGCAAAT TAGCTCTCGC ACAAAGCCTG AACTTCAGCA TGATGGATAT TGGTGAAACT
AAAGCGAGCT CTGGATTCAA TAAAATCATA AAGATCGTCA ACGGATATGC CTTTGATGAT
ACGGGCAATA TGAGCGAAGA AGATGCTCAG CAGTATGTGA GTCTCGCTGA AAATCATGGT
GATGCTGTGG TGGTTAGCCC TGTGACATTC AATGAGGGAC AGCCGACGAT TACCTTTTCA
GTCAAGCGTT TCGATGAGTC AGTAGATTTC TTCGTATTCA ACCTTTCCGC CTTTAGTCAA
ATGATGACCG ATTACGCAAC CGAGGGCAGC TTTGCGGAAT TGATGGCTAA TGGAAATGTG
ATTTTCTCGG ATAAGCAAGG GGTAAACCTC ACGCCCATTA CTCGTCCAAT CAATTTTGCT
GGACAAGATT GGCAGTTGAT TGGCTACATC GATTTAACCG CGATTCAAGC CAATACCGAT
CAGCTCAACT GGAAAATTAC CCTCGCGCTT TTAGTCTGTG CCTCCGTCAT TATTGTTGCC
AGCGTGACTA TGCTGCACGT TTCATTTAAG CCATTGAGCC GCCTTAACAC TTTGGTTGCC
AACCTATCAC AAGGTAATGG TGATCTAACC CAACGTCTCG CCGTTGAATC AAAAGATGAA
ATTGGTCAAA TCTGCAACTC CATCAACCTT TTCATTGAAA AACTGCAGCA GATGTTTATC
GACGTAGCTG ACTCATCGAA AGAGATTGAT CGTGCCGTTG TACATTTAAG CAACCAAGCT
CGTTCCAATC TCAATACGCT TAATCAACAT ACGCAAGAAA CTGAACAAGC GATTACCGCC
ATTGAAGAGA TGAGTGCTAG CGCAGGCTCT ATTGCGCAAA GTGCGGATGA TGCCGCACTA
CTTACCGAAC GAACAAATCG TTATGCTGAT GAATCAAAAC AAACCGTTAC CGAAGCTGTC
AACAGTGTCA ATGGACTGGT GAACCAAGTC TCCTCGATGG CAGAAACTAT CACGCGTATG
AGCGAGGACA CGAAGCAAAT CAATTCCGTA TTACAAGTCA TCGGCGCGAT TGCAGAACAA
ACTAATCTAC TGGCGCTCAA TGCGGCGATC GAAGCTGCTC GTGCTGGTGA ACAAGGCAGA
GGTTTTGCGG TAGTCGCTGA TGAAGTTCGT GCATTAGCCT CTCGAACACA ACAGAGCACT
TCGCAAATTA ATGACATGCT CGCGACCTTA AAAACCACGA CAGAAAACGT AGTAAAAGAG
ATGGACTCAA CCCGTATTCA TTGTGAAGAA ACCGCTGAAC GCACCAATCA TGTGATGGAT
TCGCTCAATG TGGTGACTGA TTCAGTCGCT GAAATGAATA ATCTGAATAC TCTTATCGCC
ACATCAGCGA TGGAGCAGCG GCAAGTTACA CACGAAGTGA GTAAAAACAT GGCGGCAATT
CAAGAGATGG TGCGTAAGCT CAACATGAAT GCCGCGCAAG TCACCTCGGT CAGCAATGAG
TTGCAAAATA CCTCACATGC ATTGAGTGAT GTGGTAGGAC GGTTTAGAGT TCAATAA
 
Protein sequence
MAQLSFKNKI IALIIAIISL TIITSYFSVN YFISDYIKQA DSQNITHNID LMQRKLENEL 
NSKLALAQSL NFSMMDIGET KASSGFNKII KIVNGYAFDD TGNMSEEDAQ QYVSLAENHG
DAVVVSPVTF NEGQPTITFS VKRFDESVDF FVFNLSAFSQ MMTDYATEGS FAELMANGNV
IFSDKQGVNL TPITRPINFA GQDWQLIGYI DLTAIQANTD QLNWKITLAL LVCASVIIVA
SVTMLHVSFK PLSRLNTLVA NLSQGNGDLT QRLAVESKDE IGQICNSINL FIEKLQQMFI
DVADSSKEID RAVVHLSNQA RSNLNTLNQH TQETEQAITA IEEMSASAGS IAQSADDAAL
LTERTNRYAD ESKQTVTEAV NSVNGLVNQV SSMAETITRM SEDTKQINSV LQVIGAIAEQ
TNLLALNAAI EAARAGEQGR GFAVVADEVR ALASRTQQST SQINDMLATL KTTTENVVKE
MDSTRIHCEE TAERTNHVMD SLNVVTDSVA EMNNLNTLIA TSAMEQRQVT HEVSKNMAAI
QEMVRKLNMN AAQVTSVSNE LQNTSHALSD VVGRFRVQ