Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1066 |
Symbol | |
ID | 5613178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1263449 |
End bp | 1265566 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931914 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001472805 |
Protein GI | 157374205 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATC TGCCCATCAG TACCAAGTTA CTCTGGATCA CCTCAGCGCT GTTTCTGGCG ATTGTGACTA TTTTATCCGT CACCTTGTGG TGGGCCTTGA GCAGCAAGAA CGCTGAGATT GCCAATGAGG TGCAGGAAGT TCTCCATCAG GAGACCAGAG CGAAACTGGA AGCCAGAGCC GGTGAGTATG GTGAGATGAT TGCGGGGTTT ATTAATGAAG CTTACCGCAT CCCATATTCG TTTGCGGCAA CGATTGAGCA GTCTTCGGGT ACAGAGCATT TAACCCGGGA AGGGTTAGAG GTCAGTGTCG CTGCCGTGTT AAAGAAGAAT AGTCAGCTGT CATCTATGTA TGCACAATTT GAAGCCAATG GTTTCGATGG TAATGACGCT CAATACCTCT CTGGAACGAG CCACAGTGTG GCGGGGGCGG GGAGTTTAGA GCTGTATTTC GTGCGTAATG ATGACGGCAG TGTCACTCAG GAGGCGGTGG ATGATGCCGC GGAGAAGTAT GTCACGACGC TGAATGAGTT CGGTATTCGC GAAGCGGAAT GGTATCTGTG CGCCAAAGAC AGTAAGCGAC CCTGTTTGAT GGAGCCCTAT CTGTATGAAG TCACACCGGG TCATAACGCC TTGATGACTT CGCTGACGGT ACCTGTAATG AAAGATGGGA AATTTACCGG ATTAGTGGGC GCCGATCTTA ACCTGCCTAT ATTTCAAAAA TTGATAAAAG AGCTATCGGG GGAACTGTAT CAAGGCAAGG CTAAGGTGAC ACTACTGAGC AGCAAGGGGT TAATCGTTGC GGCGAGTCAC TATGACAAGA TGGCGAGACC AGTAAAGGAG GCGATGAGTG CCGATCTGGC CGGGCAATTG CGGAATCTCC ACAAGGGGGA GAGGTATTTC GAAAATGACG TTGAGATCGC GGTCGCCTAT CCCATCGATA TTCCGCTGTC TGGCAGTACC TGGTCGCTGG TGATTGAGGT ACCCAGAGAG GAGGCATTTA AGACCGCCAT GGCGCTTAAT GATCAGATGC AGGCGATGGC CCAATCATTG GGAAGTCTGC AGCTCACATT AGGCGCGGTC GTGTCTGTTA TTGCCGTTTT CAGTATCTGG CTGGTGATCC GCAGCATCAT ATCACCACTG AGGATGATCC AATCCAGAGT CGAAAACCTT GCCAGTGCGG AGGGGGACTT GACTCAATCT ATCGAGGTCG AGTCACATGC CGAATTGATA GCCTTAGGCA AAGGGTTTAA TGCATTTCTC ACTAAACTCA GGTTATTAAT CGTCGAGCTA AAACAGTTGG CAAGCCAGTC ACAACAGGAA AGCCTGACCG TTGCAAATAT TGCGCAGCAA ACCCGAGACA GTGTCAATGG TCAATACGGT GAGATTGAAA GTGTGGTTAC TGCGGTGAAT CAGATGAGCG CTACGGCACT GGAAGTGGCT AAAGCCTCGG AGCAGACCGC GATGGAAACC GATGCGATGT CGCAGAATGT GAAGCAGAGT GAGCATAGCC TGATGACGGC CATGGAGTGT GTGACCACTA TGTCTGAAGA GTCTCTACAG GCTAAAGAGG CGGTAGGTCG AGTCTCTACA AGCAGCGATA ATATCAGCTC AATCGTTGAG GTTATCCGCT CAATCGCTGA ACAGACAAAC TTACTCGCAC TTAATGCCGC CATCGAGGCC GCCAGAGCCG GCGAACAGGG ACGGGGCTTC GCGGTAGTTG CCGACGAAGT GAGAGCCTTG GCGTCGAAGA CACAGACATC GACAGACGAC ATTACTCAGT TGATCAGCTC GTTGCAGATG GAGGTGAGTA GTGCCTCTGA TGTGATAGAC AGTGGTGCAG TAAAAGCCCA GCAGGCCGTG GCTCAAACAG AGGAGGCGCT GGCTTCGATC AACGCCATGG TGGCACAGAT AGATGAGGTC TCGAGCCAGG TTACCCATAT CGCCACTGCA GCTGAGGAGC AAAGTGCCGT CACCGAAGAG GTGAATAAGA ATATAACCGG GATCTCTGAT TCCGCATCCG ATCTCGCCAG GCTTGCCGGT GAAGCGCTGG ATAGCAGTAC TAATCTGGCC GATTTAGTGA AGTCACAGCA TGAGCAGCTG GGTCGATTGA AGACTTAA
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Protein sequence | MKHLPISTKL LWITSALFLA IVTILSVTLW WALSSKNAEI ANEVQEVLHQ ETRAKLEARA GEYGEMIAGF INEAYRIPYS FAATIEQSSG TEHLTREGLE VSVAAVLKKN SQLSSMYAQF EANGFDGNDA QYLSGTSHSV AGAGSLELYF VRNDDGSVTQ EAVDDAAEKY VTTLNEFGIR EAEWYLCAKD SKRPCLMEPY LYEVTPGHNA LMTSLTVPVM KDGKFTGLVG ADLNLPIFQK LIKELSGELY QGKAKVTLLS SKGLIVAASH YDKMARPVKE AMSADLAGQL RNLHKGERYF ENDVEIAVAY PIDIPLSGST WSLVIEVPRE EAFKTAMALN DQMQAMAQSL GSLQLTLGAV VSVIAVFSIW LVIRSIISPL RMIQSRVENL ASAEGDLTQS IEVESHAELI ALGKGFNAFL TKLRLLIVEL KQLASQSQQE SLTVANIAQQ TRDSVNGQYG EIESVVTAVN QMSATALEVA KASEQTAMET DAMSQNVKQS EHSLMTAMEC VTTMSEESLQ AKEAVGRVST SSDNISSIVE VIRSIAEQTN LLALNAAIEA ARAGEQGRGF AVVADEVRAL ASKTQTSTDD ITQLISSLQM EVSSASDVID SGAVKAQQAV AQTEEALASI NAMVAQIDEV SSQVTHIATA AEEQSAVTEE VNKNITGISD SASDLARLAG EALDSSTNLA DLVKSQHEQL GRLKT
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