More than 300 homologs were found in PanDaTox collection
for query gene PP_0562 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0562  methyl-accepting chemotaxis sensory transducer  100 
 
 
653 aa  1272    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0607  methyl-accepting chemotaxis sensory transducer  95.71 
 
 
653 aa  1152    Pseudomonas putida GB-1  Bacteria  normal  normal  0.100705 
 
 
-
 
NC_010501  PputW619_4603  methyl-accepting chemotaxis sensory transducer  89.59 
 
 
653 aa  1058    Pseudomonas putida W619  Bacteria  normal  normal  0.149752 
 
 
-
 
NC_009512  Pput_0601  methyl-accepting chemotaxis sensory transducer  98.32 
 
 
653 aa  1249    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0622  chemotaxis sensory transducer  74.49 
 
 
648 aa  872    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0717  methyl-accepting chemotaxis sensory transducer  64.83 
 
 
654 aa  748    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5564  putative chemotaxis transducer  65.91 
 
 
657 aa  753    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_64060  putative chemotaxis transducer  64.89 
 
 
657 aa  724    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  28.68 
 
 
640 aa  187  7e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  36 
 
 
541 aa  184  3e-45  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  35.49 
 
 
544 aa  180  7e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  33.18 
 
 
640 aa  179  1e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  34.55 
 
 
629 aa  179  1e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  36.72 
 
 
773 aa  178  4e-43  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  32.55 
 
 
638 aa  177  4e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  34.58 
 
 
637 aa  176  9e-43  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
568 aa  176  9.999999999999999e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  34.74 
 
 
543 aa  176  1.9999999999999998e-42  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2828  methyl-accepting chemotaxis sensory transducer  35.88 
 
 
550 aa  176  1.9999999999999998e-42  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000014913 
 
 
-
 
NC_009052  Sbal_1494  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
548 aa  175  1.9999999999999998e-42  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3465  methyl-accepting chemotaxis sensory transducer  36.1 
 
 
423 aa  174  2.9999999999999996e-42  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  39.68 
 
 
650 aa  175  2.9999999999999996e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  35.52 
 
 
646 aa  174  3.9999999999999995e-42  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.8 
 
 
523 aa  172  1e-41  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  36.42 
 
 
543 aa  172  1e-41  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  34.65 
 
 
634 aa  172  1e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  34.28 
 
 
497 aa  172  1e-41  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  34.97 
 
 
676 aa  172  2e-41  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  38.13 
 
 
541 aa  171  4e-41  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  42 
 
 
532 aa  171  5e-41  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  38.44 
 
 
633 aa  170  6e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_010814  Glov_2776  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
544 aa  170  6e-41  Geobacter lovleyi SZ  Bacteria  normal  0.839191  n/a   
 
 
-
 
NC_009438  Sputcn32_1396  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
548 aa  170  6e-41  Shewanella putrefaciens CN-32  Bacteria  normal  0.664947  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  35.34 
 
 
642 aa  170  9e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  35.23 
 
 
630 aa  169  1e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
630 aa  169  1e-40  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  36.91 
 
 
541 aa  168  2e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  36.63 
 
 
545 aa  169  2e-40  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0922  methyl-accepting chemotaxis sensory transducer  32.6 
 
 
674 aa  168  2e-40  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
630 aa  169  2e-40  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.84 
 
 
632 aa  168  2.9999999999999998e-40  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  34.5 
 
 
541 aa  168  2.9999999999999998e-40  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  34.65 
 
 
634 aa  167  4e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  35.91 
 
 
541 aa  167  4e-40  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  44.92 
 
 
521 aa  168  4e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  37.88 
 
 
545 aa  168  4e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  37.99 
 
 
492 aa  167  5e-40  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  37.99 
 
 
492 aa  167  5e-40  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  35.14 
 
 
630 aa  167  5.9999999999999996e-40  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  34.86 
 
 
712 aa  167  6.9999999999999995e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  37.5 
 
 
619 aa  167  8e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  35.53 
 
 
564 aa  166  9e-40  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
541 aa  166  9e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
630 aa  166  1.0000000000000001e-39  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
630 aa  166  1.0000000000000001e-39  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  40.56 
 
 
521 aa  166  1.0000000000000001e-39  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.04 
 
 
630 aa  166  1.0000000000000001e-39  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  38.93 
 
 
647 aa  166  1.0000000000000001e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  34.17 
 
 
642 aa  166  1.0000000000000001e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  33.96 
 
 
634 aa  166  1.0000000000000001e-39  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  37.01 
 
 
626 aa  166  1.0000000000000001e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.56 
 
 
521 aa  166  1.0000000000000001e-39  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
630 aa  166  1.0000000000000001e-39  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
521 aa  166  1.0000000000000001e-39  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  36.25 
 
 
645 aa  166  2.0000000000000002e-39  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0798  methyl-accepting chemotaxis sensory transducer  36.69 
 
 
541 aa  166  2.0000000000000002e-39  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  38.59 
 
 
411 aa  165  2.0000000000000002e-39  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  35.14 
 
 
681 aa  166  2.0000000000000002e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  34.58 
 
 
628 aa  165  2.0000000000000002e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  34.57 
 
 
712 aa  165  2.0000000000000002e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  37.73 
 
 
572 aa  165  2.0000000000000002e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1322  methyl-accepting chemotaxis sensory transducer  36 
 
 
667 aa  165  2.0000000000000002e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  32.52 
 
 
545 aa  166  2.0000000000000002e-39  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009665  Shew185_3077  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
539 aa  165  3e-39  Shewanella baltica OS185  Bacteria  normal  0.417897  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  35.38 
 
 
676 aa  165  3e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1752  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
492 aa  165  3e-39  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000000224536 
 
 
-
 
NC_009052  Sbal_3067  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
539 aa  165  3e-39  Shewanella baltica OS155  Bacteria  normal  0.0971462  n/a   
 
 
-
 
NC_009457  VC0395_A2016  methyl-accepting chemotaxis protein  34.31 
 
 
433 aa  164  5.0000000000000005e-39  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000104003  n/a   
 
 
-
 
NC_009997  Sbal195_3220  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
539 aa  164  5.0000000000000005e-39  Shewanella baltica OS195  Bacteria  normal  0.0243326  normal 
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  34.79 
 
 
493 aa  164  5.0000000000000005e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  37.92 
 
 
541 aa  164  6e-39  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.58 
 
 
521 aa  164  6e-39  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  38.26 
 
 
647 aa  164  7e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  37.25 
 
 
674 aa  163  9e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  36.77 
 
 
558 aa  163  9e-39  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_28050  putative chemotaxis transducer  38.46 
 
 
531 aa  163  9e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.652078  normal 
 
 
-
 
NC_009901  Spea_2398  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
656 aa  163  1e-38  Shewanella pealeana ATCC 700345  Bacteria  normal  0.201842  n/a   
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  31.75 
 
 
541 aa  162  2e-38  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  31.75 
 
 
541 aa  162  2e-38  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  35.51 
 
 
543 aa  162  2e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_009656  PSPA7_2443  putative chemotaxis transducer  38.8 
 
 
531 aa  162  2e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  38.33 
 
 
492 aa  162  2e-38  Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  31.18 
 
 
663 aa  162  2e-38  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  34.55 
 
 
716 aa  162  2e-38  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  36.02 
 
 
549 aa  161  3e-38  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3323  methyl-accepting chemotaxis sensory transducer  36.79 
 
 
539 aa  162  3e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  36.46 
 
 
552 aa  161  3e-38  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  36.46 
 
 
552 aa  161  3e-38  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  33.51 
 
 
640 aa  161  3e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  36.36 
 
 
638 aa  161  3e-38  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
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