More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1352 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  52.26 
 
 
664 aa  662    Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_010506  Swoo_2282  methyl-accepting chemotaxis sensory transducer  51.96 
 
 
664 aa  655    Shewanella woodyi ATCC 51908  Bacteria  normal  0.330304  normal 
 
 
-
 
NC_011663  Sbal223_2369  methyl-accepting chemotaxis sensory transducer  53.71 
 
 
664 aa  666    Shewanella baltica OS223  Bacteria  normal  0.0315396  normal  0.0961625 
 
 
-
 
NC_009438  Sputcn32_1813  methyl-accepting chemotaxis sensory transducer  51.51 
 
 
664 aa  661    Shewanella putrefaciens CN-32  Bacteria  normal  0.280908  n/a   
 
 
-
 
NC_009997  Sbal195_1957  methyl-accepting chemotaxis sensory transducer  53.71 
 
 
664 aa  665    Shewanella baltica OS195  Bacteria  normal  0.257458  normal  0.211978 
 
 
-
 
NC_008577  Shewana3_1790  methyl-accepting chemotaxis sensory transducer  52.19 
 
 
664 aa  657    Shewanella sp. ANA-3  Bacteria  normal  0.119789  normal  0.182995 
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  50.3 
 
 
664 aa  647    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1685  methyl-accepting chemotaxis sensory transducer  52.04 
 
 
664 aa  659    Shewanella sp. MR-4  Bacteria  normal  0.0832618  normal  0.158688 
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  51.44 
 
 
662 aa  648    Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_008322  Shewmr7_1760  methyl-accepting chemotaxis sensory transducer  52.5 
 
 
664 aa  664    Shewanella sp. MR-7  Bacteria  normal  0.106787  normal  0.536367 
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  51.96 
 
 
666 aa  664    Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  100 
 
 
668 aa  1346    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1950  methyl-accepting chemotaxis sensory transducer  53.56 
 
 
664 aa  666    Shewanella baltica OS185  Bacteria  normal  0.0377955  n/a   
 
 
-
 
NC_009052  Sbal_1924  methyl-accepting chemotaxis sensory transducer  56.08 
 
 
531 aa  559  1e-158  Shewanella baltica OS155  Bacteria  normal  0.666083  n/a   
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  36.5 
 
 
662 aa  324  3e-87  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  31.09 
 
 
653 aa  271  2.9999999999999997e-71  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_007575  Suden_0983  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
720 aa  269  1e-70  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  29.91 
 
 
661 aa  267  5.999999999999999e-70  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  33.95 
 
 
661 aa  266  1e-69  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  31.15 
 
 
605 aa  265  3e-69  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  31.66 
 
 
653 aa  262  2e-68  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  32.12 
 
 
661 aa  258  3e-67  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  32.24 
 
 
653 aa  251  4e-65  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_007575  Suden_0989  methyl-accepting chemotaxis sensory transducer  29.38 
 
 
720 aa  250  5e-65  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  30.15 
 
 
658 aa  245  1.9999999999999999e-63  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  43.27 
 
 
638 aa  234  3e-60  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  40.31 
 
 
543 aa  233  8.000000000000001e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  45.78 
 
 
637 aa  228  3e-58  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.3 
 
 
636 aa  221  3e-56  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009654  Mmwyl1_0982  methyl-accepting chemotaxis sensory transducer  27.9 
 
 
663 aa  220  6e-56  Marinomonas sp. MWYL1  Bacteria  normal  0.293812  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  43.52 
 
 
552 aa  219  1e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  44.26 
 
 
523 aa  219  1e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  36.17 
 
 
640 aa  218  2.9999999999999998e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
541 aa  218  2.9999999999999998e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  44.37 
 
 
679 aa  214  2.9999999999999995e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
568 aa  215  2.9999999999999995e-54  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
541 aa  214  3.9999999999999995e-54  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
564 aa  212  2e-53  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3099  methyl-accepting chemotaxis sensory transducer  28.77 
 
 
672 aa  212  2e-53  Marinobacter aquaeolei VT8  Bacteria  normal  0.500846  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  38.5 
 
 
713 aa  210  5e-53  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  36.48 
 
 
629 aa  210  6e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  40.79 
 
 
712 aa  210  7e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  40.63 
 
 
712 aa  209  1e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  41.74 
 
 
411 aa  207  4e-52  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  36.29 
 
 
641 aa  207  5e-52  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  43.56 
 
 
624 aa  207  7e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  37.28 
 
 
541 aa  206  9e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  38.64 
 
 
540 aa  206  1e-51  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
552 aa  205  2e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  37.86 
 
 
640 aa  205  3e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  43.51 
 
 
634 aa  204  4e-51  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  40.89 
 
 
561 aa  204  5e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  37.5 
 
 
633 aa  204  5e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  44.56 
 
 
634 aa  203  7e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  42.53 
 
 
634 aa  203  7e-51  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  36.08 
 
 
541 aa  203  7e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  40.3 
 
 
548 aa  203  9e-51  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_010501  PputW619_1752  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
492 aa  202  9.999999999999999e-51  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000000224536 
 
 
-
 
NC_009831  Ssed_2783  methyl-accepting chemotaxisprotein  36.8 
 
 
690 aa  202  9.999999999999999e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.468562 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  38.92 
 
 
620 aa  202  1.9999999999999998e-50  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
638 aa  202  1.9999999999999998e-50  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
638 aa  201  3e-50  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
650 aa  201  3e-50  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  38.62 
 
 
639 aa  201  3e-50  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
674 aa  201  3e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  37.32 
 
 
533 aa  201  3e-50  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  40.58 
 
 
561 aa  201  3e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
638 aa  201  3.9999999999999996e-50  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  35.5 
 
 
619 aa  201  3.9999999999999996e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  38.17 
 
 
773 aa  201  3.9999999999999996e-50  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  41.47 
 
 
716 aa  201  3.9999999999999996e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  39.68 
 
 
630 aa  201  3.9999999999999996e-50  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  39.35 
 
 
634 aa  201  5e-50  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  38.86 
 
 
545 aa  201  5e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  41.5 
 
 
572 aa  200  6e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  29.43 
 
 
653 aa  200  7e-50  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2657  methyl-accepting chemotaxis sensory transducer  27.39 
 
 
646 aa  200  7.999999999999999e-50  Dickeya dadantii Ech703  Bacteria  normal  0.653915  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
638 aa  199  1.0000000000000001e-49  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  38.42 
 
 
621 aa  199  1.0000000000000001e-49  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_010506  Swoo_2814  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
702 aa  199  1.0000000000000001e-49  Shewanella woodyi ATCC 51908  Bacteria  normal  0.650804  normal 
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  38.33 
 
 
652 aa  199  1.0000000000000001e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  34.94 
 
 
554 aa  198  2.0000000000000003e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  36.29 
 
 
637 aa  199  2.0000000000000003e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  39.81 
 
 
623 aa  198  3e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  35.99 
 
 
492 aa  197  4.0000000000000005e-49  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  35.54 
 
 
559 aa  197  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  28.74 
 
 
646 aa  197  4.0000000000000005e-49  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  38.8 
 
 
545 aa  197  5.000000000000001e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  36.87 
 
 
493 aa  197  6e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1353  methyl-accepting chemotaxis sensory transducer  38 
 
 
547 aa  196  9e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.769572  normal 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  40 
 
 
645 aa  196  1e-48  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
645 aa  195  2e-48  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
554 aa  196  2e-48  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
492 aa  196  2e-48  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_004578  PSPTO_2254  methyl-accepting chemotaxis protein  37.47 
 
 
491 aa  196  2e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.177753  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  37.12 
 
 
638 aa  196  2e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
492 aa  196  2e-48  Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  29.14 
 
 
642 aa  195  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  37.39 
 
 
539 aa  195  2e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  40 
 
 
638 aa  195  2e-48  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
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