More than 300 homologs were found in PanDaTox collection
for query gene PC1_0413 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_0492  methyl-accepting chemotaxis sensory transducer  89.28 
 
 
649 aa  1120    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  100 
 
 
653 aa  1315    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  53.42 
 
 
646 aa  609  1e-173  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_012880  Dd703_2657  methyl-accepting chemotaxis sensory transducer  49.69 
 
 
646 aa  595  1e-169  Dickeya dadantii Ech703  Bacteria  normal  0.653915  n/a   
 
 
-
 
NC_007963  Csal_1726  methyl-accepting chemotaxis sensory transducer  50.33 
 
 
702 aa  280  7e-74  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.333472  n/a   
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  29.84 
 
 
662 aa  268  2.9999999999999995e-70  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  30.31 
 
 
662 aa  263  6e-69  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  49.29 
 
 
863 aa  253  1e-65  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  45.77 
 
 
586 aa  252  2e-65  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  41.33 
 
 
610 aa  251  4e-65  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  48.58 
 
 
1123 aa  251  4e-65  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3618  methyl-accepting chemotaxis sensory transducer  48.42 
 
 
620 aa  250  5e-65  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0344374  normal 
 
 
-
 
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  30.57 
 
 
705 aa  250  5e-65  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5471  methyl-accepting chemotaxis sensory transducer  48.42 
 
 
620 aa  250  6e-65  Burkholderia ambifaria AMMD  Bacteria  normal  0.407039  normal 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  43.4 
 
 
583 aa  249  8e-65  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  43.15 
 
 
653 aa  249  9e-65  Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  44.22 
 
 
572 aa  249  1e-64  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012912  Dd1591_2086  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
653 aa  249  1e-64  Dickeya zeae Ech1591  Bacteria  normal  0.0240769  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  42.9 
 
 
542 aa  249  1e-64  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3786  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.71 
 
 
610 aa  248  2e-64  Delftia acidovorans SPH-1  Bacteria  normal  0.0254049  normal  0.3858 
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.47 
 
 
864 aa  248  2e-64  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4997  methyl-accepting chemotaxis sensory transducer  47.1 
 
 
620 aa  246  6.999999999999999e-64  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.245568 
 
 
-
 
NC_008061  Bcen_4628  methyl-accepting chemotaxis sensory transducer  43.25 
 
 
620 aa  246  6.999999999999999e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3736  methyl-accepting chemotaxis sensory transducer  43.25 
 
 
620 aa  246  6.999999999999999e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  0.455432  normal  0.0212994 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  41.69 
 
 
543 aa  244  3e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  44.75 
 
 
569 aa  244  3e-63  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2019  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
644 aa  244  3.9999999999999997e-63  Pectobacterium wasabiae WPP163  Bacteria  normal  0.858801  n/a   
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  47.54 
 
 
860 aa  244  3.9999999999999997e-63  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  43.89 
 
 
653 aa  244  3.9999999999999997e-63  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2698  methyl-accepting chemotaxis protein I  41.41 
 
 
640 aa  244  5e-63  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3785  methyl-accepting chemotaxis sensory transducer  43.21 
 
 
620 aa  243  6e-63  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0060774  normal  0.0147123 
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  44.01 
 
 
650 aa  243  7e-63  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  48.38 
 
 
575 aa  243  1e-62  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  44.31 
 
 
678 aa  243  1e-62  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C6641  methyl-accepting chemotaxis sensory transducer  39.41 
 
 
609 aa  242  2e-62  Burkholderia sp. 383  Bacteria  normal  normal  0.0855945 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  41.55 
 
 
537 aa  242  2e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_011992  Dtpsy_2088  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.25 
 
 
617 aa  241  2e-62  Acidovorax ebreus TPSY  Bacteria  normal  0.258516  n/a   
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  43.6 
 
 
559 aa  241  2.9999999999999997e-62  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
589 aa  241  2.9999999999999997e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
513 aa  241  4e-62  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  29.67 
 
 
661 aa  240  5e-62  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  44.76 
 
 
549 aa  240  6.999999999999999e-62  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  33.95 
 
 
661 aa  239  8e-62  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3471  putative methyl-accepting chemotaxis protein  45.95 
 
 
605 aa  239  9e-62  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2894  methyl-accepting chemotaxis protein, putative  45.95 
 
 
605 aa  239  1e-61  Burkholderia mallei ATCC 23344  Bacteria  normal  0.955347  n/a   
 
 
-
 
NC_007434  BURPS1710b_0112  putative methyl-accepting chemotaxis protein  45.95 
 
 
605 aa  239  1e-61  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3894  methyl-accepting chemotaxis protein  45.95 
 
 
601 aa  239  1e-61  Burkholderia pseudomallei 668  Bacteria  normal  0.0518753  n/a   
 
 
-
 
NC_008062  Bcen_6463  methyl-accepting chemotaxis sensory transducer  45.48 
 
 
654 aa  239  1e-61  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3975  methyl-accepting chemotaxis protein  45.95 
 
 
601 aa  239  1e-61  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6698  methyl-accepting chemotaxis sensory transducer  45.48 
 
 
605 aa  239  1e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0770827  normal  0.965565 
 
 
-
 
NC_007434  BURPS1710b_2819  methyl-accepting chemotaxis protein I  41.44 
 
 
640 aa  239  2e-61  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1642  methyl-accepting chemotaxis sensory transducer  43.15 
 
 
599 aa  238  2e-61  Burkholderia sp. 383  Bacteria  normal  normal  0.255489 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  41.96 
 
 
562 aa  238  2e-61  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  41.24 
 
 
584 aa  238  2e-61  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1806  methyl-accepting chemotaxis sensory transducer  43.17 
 
 
652 aa  239  2e-61  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  45.21 
 
 
797 aa  238  2e-61  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.29 
 
 
584 aa  238  2e-61  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  28.79 
 
 
664 aa  238  3e-61  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  45.83 
 
 
733 aa  238  3e-61  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  39.9 
 
 
551 aa  237  4e-61  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
651 aa  237  4e-61  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_007651  BTH_I3209  methyl-accepting chemotaxis protein, putative  45.61 
 
 
601 aa  237  4e-61  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  43.08 
 
 
557 aa  237  5.0000000000000005e-61  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_009076  BURPS1106A_2755  methyl-accepting chemotaxis protein  41.18 
 
 
640 aa  236  7e-61  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3992  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
599 aa  236  7e-61  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6304  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.15 
 
 
605 aa  236  7e-61  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.598133  normal 
 
 
-
 
NC_008543  Bcen2424_4375  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
599 aa  236  7e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  0.480091  normal 
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  40.81 
 
 
628 aa  236  8e-61  Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2395  putative methyl-accepting chemotaxis protein  41.18 
 
 
640 aa  236  9e-61  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0617  methyl-accepting chemotaxis protein, putative  41.18 
 
 
640 aa  236  9e-61  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1709  putative methyl-accepting chemotaxis protein  41.18 
 
 
640 aa  236  9e-61  Burkholderia mallei NCTC 10247  Bacteria  normal  0.142382  n/a   
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  29.79 
 
 
661 aa  236  1.0000000000000001e-60  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  38 
 
 
554 aa  236  1.0000000000000001e-60  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2892  putative methyl-accepting chemotaxis protein  41.18 
 
 
631 aa  236  1.0000000000000001e-60  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0367136  n/a   
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
596 aa  236  1.0000000000000001e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  40.95 
 
 
580 aa  236  1.0000000000000001e-60  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  41.92 
 
 
555 aa  236  1.0000000000000001e-60  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_009832  Spro_0080  methyl-accepting chemotaxis sensory transducer  45.2 
 
 
642 aa  236  1.0000000000000001e-60  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1100  methyl-accepting chemotaxis sensory transducer  41.8 
 
 
611 aa  236  1.0000000000000001e-60  Acidovorax citrulli AAC00-1  Bacteria  normal  0.127748  normal 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  44.61 
 
 
595 aa  236  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_010524  Lcho_1600  methyl-accepting chemotaxis sensory transducer  45.21 
 
 
594 aa  235  2.0000000000000002e-60  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.00034667 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  44.79 
 
 
585 aa  235  2.0000000000000002e-60  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  45.83 
 
 
753 aa  235  2.0000000000000002e-60  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2969  methyl-accepting chemotaxis sensory transducer  43.5 
 
 
550 aa  235  2.0000000000000002e-60  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2022  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.6 
 
 
748 aa  235  2.0000000000000002e-60  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3477  methyl-accepting chemotaxis sensory transducer with Cache sensor  44.92 
 
 
606 aa  235  2.0000000000000002e-60  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  44.7 
 
 
752 aa  235  2.0000000000000002e-60  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  43.69 
 
 
591 aa  234  3e-60  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  35.82 
 
 
554 aa  234  3e-60  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  43.69 
 
 
591 aa  234  4.0000000000000004e-60  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  46.64 
 
 
767 aa  233  6e-60  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5980  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.26 
 
 
599 aa  233  6e-60  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2119  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
549 aa  233  6e-60  Enterobacter sp. 638  Bacteria  normal  normal  0.164628 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  41.18 
 
 
562 aa  233  7.000000000000001e-60  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010682  Rpic_0536  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.55 
 
 
609 aa  233  7.000000000000001e-60  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  41.28 
 
 
566 aa  233  7.000000000000001e-60  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_013421  Pecwa_3618  methyl-accepting chemotaxis sensory transducer  42.02 
 
 
551 aa  233  9e-60  Pectobacterium wasabiae WPP163  Bacteria  normal  0.453306  n/a   
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  30.25 
 
 
666 aa  233  9e-60  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  43.44 
 
 
584 aa  232  1e-59  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0940  methyl-accepting chemotaxis sensory transducer  44.62 
 
 
546 aa  233  1e-59  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000958657  normal  0.647876 
 
 
-
 
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