| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0111 |
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| Symbol | |
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| ID | 4920842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 121633 |
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| End bp | 124227 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161622 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001092242 |
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| Protein GI | 127511045 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCAA TGAACAGCAA GACTGGCAAC GCAAACAATC TGCCGATCAT TGGACTGCTT
ATCGCTGGCG TCGCAGCCCT ATTGGCCTTT ACCCAGCAGC CCTCGCTCTG GGTCGGCATA
GCTCAGGTGG TTGCCATCGC CGTCATCGCC CTGGGTATTC AACAACAGGG GCAGACGCAA
CACAGTCTGC GGCAAGCCTT CGAGGAGATC CACCAGGCAC TCGAAGGCAA GAATCCGCCG
AGCTTTTCCG CCTTCGACTA TCCCCATTGG CCTGAGATCA GCCAGAGCCT GACCCAGCAA
TGGCATGCCA ACCAGGGCAA TCAGGCACAG CTCAGGGCAC TGGAGATCTG CCAGGCCAAC
GTGATGCTTG CCGACCCCCA AGGCAATATT AACTTCCTCA ACCAGTCGCT GCGCCAGACC
CTGGAAAAGG CCGAGTCCGA CATACAGCAG GCGATAGCCA GCTTCAGTGT CGACACGCTT
ATCGGCACCA ACATGGATAC CTTCCACCAG CAACCCAGCC ATCAACAAAA CATCATCGCT
AAGCTGCAGC GCCCTCACTC GGCGCAGATT AAGGTGGGTA GTCGCATCTT TTCCTTGATC
GCCTCTCCCG TATTTGACGA CAAACATCAA CGCATCGCGA CTGTGGTCGA ATGGCAGGAT
AAGACCGAGG CCCTGGCCAA GGCCGATGCG GAGAACAAGC TGGCCCAGGA GAACAGCCGC
ATCAAGCAGG CGCTGGATGT CTGCCGCGCC AACGTCATGG TGGCGGATGC CGACTATAAC
ATCATCTACC TCAACGACTC TGTCACCCAG ATGCTTAAGG ACAATGAGCA GACGCTGCAA
CAGACGCTGA CCAAATTCAA TACCAATAGC CTGCTCGGCA GCAATATCGA TATCTTCCAC
CAGAACCCGG CCCATCAACG TAAGATGCTC GACAGGCTCA CCGGCAGCTA CGACACCAGC
ATTCAGGTCG CGGGGCTAGA CTTCACCCTG ATCGCCACCC CGGTATTTGA GAATGGCGTG
CGCACGGGTA CTGTGGTCGA GTGGCAGGAT GTCACCGAGA AGCTGGCTAA GGAGGCGAAG
GAACGTCAAC TAGCCGCCGA GAATGCCCGC ATCAAGCAGG CGCTGGACAA TGTCTCCTCC
AATACCATGG TGGCCGACGC CGATCTGAAC ATCATCTACA TGAACAAGGC CGTCAGCCAG
ATGTTCAAGC AGGCGCAGAA TGATATTGCC AAGGATCTGC CTAACTTCGA CGCCAGTAAC
CTCATGGGCG TCAACATAGA CAACTTCCAC AAGAATCCCA GCCATCAACG CAACCTGCTC
AAGACGCTGA CCACCACCTA CACCAGCCAG CTCAAGGTTG GCGGACGCAC CTTCCAGGTA
GTCGCCAACC CTATCCGCGA TCCTAACGGT GAAAGCATAG GCACGGTTGT GGAATGGGCC
GACAGAACCG CCGAGGTGGC GATAGAACAT GAGATAGATT CCATCATAGG CGCCGCCAGC
AAGGGGGATC TCTCCCTGAG GGTAGGCACC CAAGATAAGG AGGGCTTCTT CCTCAATCTC
TCCAACGGCC TCAACCGTCT CGTCGGCATC GCCGACCAGG TGATAGGCGA TGTGGTGAAC
ATGTTCGACG GCCTGGCCAA GGGGGATCTC AATCGTCAGA TCCAGGGCGA GTATCAGGGC
CAGTTCGGCA AGCTACAGGC CGATGCCAAT GCCACCGCTG CCAAGCTGAC CGAGGTCCTC
GACGGCATCA ACCAGTCGGC CAATACAGTG ACCTCTGGCG CCGAAGAGAT CGCCCAGGGT
AACGCCGACC TGAGTCAGCG CACCGAGGAG CAGGCCGCCT CCCTCGAAGA GACAGCCTCC
AGCATGGAAG AGATGACGGC AACCGTCACC CAGAGCGCGC AAAACGCCAC GGTCGCCAAT
CAGCTGGCCC AGGAGGCCAA CACTAAGGCC GCCCACGGCG GCAAGGTGGT GGAGCAGGCC
GTGACTGCCA TGGAGGCAAT CAACGAATCG AGCAAGCGTA TCGCCGACAT CATAGGGGTG
ATCGATGAGA TCGCCTTCCA GACCAATCTG CTGGCCCTCA ATGCCGCCGT CGAGGCCGCC
AGAGCGGGCG AGCAGGGACG CGGCTTTGCC GTGGTGGCTG GCGAGGTGCG TAACCTGGCA
CAGCGCAGCG CCGGCGCCGC CAAGGAGATC AAGGAGCTGA TCCGTGACAG CGTGACCAAG
GTGACCGACG GTACCCAGCT GGTGAACCAG TCGGGTGAGA CCCTGGAAGA TATCGTACAG
GCGGTGACTA AAGTCGCCGA TATGATCAGC CAGATCAGCA TCGCCTCGGA TCAACAGTCG
GCGGGTATTC AGGAGGTCAA CAAGGCGATC TCCCAGATGG ATGAGATGAC CCAGCAAAAC
GCCGCCCTGG TCGAACAGGT ATCGGCCGCC GGCGATGCCA TGGCCGAGCA GGCACGCAAC
ATGAAGTCTC AGCTCGGCTT CTTCCAGTCT CAAGCTCCGA TGCATTCGGG CATGACCTCG
GCACCGCTCT CCCTGGTGGC CGGCGATAGC CACGGTCCCC TGAACATCAG CAACGAGGAG
TGGAACGAGT TTTAG
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| Protein sequence | MDAMNSKTGN ANNLPIIGLL IAGVAALLAF TQQPSLWVGI AQVVAIAVIA LGIQQQGQTQ
HSLRQAFEEI HQALEGKNPP SFSAFDYPHW PEISQSLTQQ WHANQGNQAQ LRALEICQAN
VMLADPQGNI NFLNQSLRQT LEKAESDIQQ AIASFSVDTL IGTNMDTFHQ QPSHQQNIIA
KLQRPHSAQI KVGSRIFSLI ASPVFDDKHQ RIATVVEWQD KTEALAKADA ENKLAQENSR
IKQALDVCRA NVMVADADYN IIYLNDSVTQ MLKDNEQTLQ QTLTKFNTNS LLGSNIDIFH
QNPAHQRKML DRLTGSYDTS IQVAGLDFTL IATPVFENGV RTGTVVEWQD VTEKLAKEAK
ERQLAAENAR IKQALDNVSS NTMVADADLN IIYMNKAVSQ MFKQAQNDIA KDLPNFDASN
LMGVNIDNFH KNPSHQRNLL KTLTTTYTSQ LKVGGRTFQV VANPIRDPNG ESIGTVVEWA
DRTAEVAIEH EIDSIIGAAS KGDLSLRVGT QDKEGFFLNL SNGLNRLVGI ADQVIGDVVN
MFDGLAKGDL NRQIQGEYQG QFGKLQADAN ATAAKLTEVL DGINQSANTV TSGAEEIAQG
NADLSQRTEE QAASLEETAS SMEEMTATVT QSAQNATVAN QLAQEANTKA AHGGKVVEQA
VTAMEAINES SKRIADIIGV IDEIAFQTNL LALNAAVEAA RAGEQGRGFA VVAGEVRNLA
QRSAGAAKEI KELIRDSVTK VTDGTQLVNQ SGETLEDIVQ AVTKVADMIS QISIASDQQS
AGIQEVNKAI SQMDEMTQQN AALVEQVSAA GDAMAEQARN MKSQLGFFQS QAPMHSGMTS
APLSLVAGDS HGPLNISNEE WNEF
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