More than 300 homologs were found in PanDaTox collection
for query gene PC1_4172 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012912  Dd1591_2086  methyl-accepting chemotaxis sensory transducer  59.67 
 
 
653 aa  761    Dickeya zeae Ech1591  Bacteria  normal  0.0240769  n/a   
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  92.19 
 
 
653 aa  1219    Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  100 
 
 
653 aa  1324    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2019  methyl-accepting chemotaxis sensory transducer  47.55 
 
 
644 aa  567  1e-160  Pectobacterium wasabiae WPP163  Bacteria  normal  0.858801  n/a   
 
 
-
 
NC_012912  Dd1591_2327  methyl-accepting chemotaxis sensory transducer  47.05 
 
 
655 aa  545  1e-154  Dickeya zeae Ech1591  Bacteria  normal  0.716134  n/a   
 
 
-
 
NC_013421  Pecwa_2018  methyl-accepting chemotaxis sensory transducer  47.95 
 
 
650 aa  522  1e-147  Pectobacterium wasabiae WPP163  Bacteria  normal  0.894021  n/a   
 
 
-
 
NC_012912  Dd1591_1838  methyl-accepting chemotaxis sensory transducer  44.23 
 
 
667 aa  466  9.999999999999999e-131  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  42.84 
 
 
661 aa  468  9.999999999999999e-131  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  44.21 
 
 
651 aa  461  9.999999999999999e-129  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_012912  Dd1591_1776  methyl-accepting chemotaxis sensory transducer  44.59 
 
 
654 aa  456  1e-127  Dickeya zeae Ech1591  Bacteria  normal  0.840752  n/a   
 
 
-
 
NC_012880  Dd703_2081  methyl-accepting chemotaxis sensory transducer  42.29 
 
 
668 aa  458  1e-127  Dickeya dadantii Ech703  Bacteria  normal  0.622232  n/a   
 
 
-
 
NC_012880  Dd703_1806  methyl-accepting chemotaxis sensory transducer  42.26 
 
 
652 aa  444  1e-123  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2100  methyl-accepting chemotaxis sensory transducer  63.26 
 
 
512 aa  439  9.999999999999999e-123  Enterobacter sp. 638  Bacteria  normal  0.0381834  normal 
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  41.68 
 
 
649 aa  421  1e-116  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  41.68 
 
 
649 aa  421  1e-116  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_009832  Spro_0080  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
642 aa  418  9.999999999999999e-116  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  43.94 
 
 
628 aa  412  1e-114  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4443  methyl-accepting chemotaxis sensory transducer  44 
 
 
630 aa  411  1e-113  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0071  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
630 aa  406  1.0000000000000001e-112  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3774  methyl-accepting chemotaxis protein  41.72 
 
 
649 aa  400  9.999999999999999e-111  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  40.41 
 
 
628 aa  387  1e-106  Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  56.67 
 
 
583 aa  359  9e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_012912  Dd1591_0769  methyl-accepting chemotaxis sensory transducer  55.29 
 
 
505 aa  353  5e-96  Dickeya zeae Ech1591  Bacteria  normal  0.0409416  n/a   
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  55.4 
 
 
557 aa  345  1e-93  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_013421  Pecwa_3873  methyl-accepting chemotaxis sensory transducer  53.57 
 
 
575 aa  342  2e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  0.460221  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  55.37 
 
 
557 aa  342  2e-92  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  55.37 
 
 
557 aa  342  2e-92  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3600  methyl-accepting chemotaxis sensory transducer  55.62 
 
 
510 aa  342  2e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3443  methyl-accepting chemotaxis sensory transducer  54.97 
 
 
511 aa  340  2.9999999999999998e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  53.03 
 
 
569 aa  341  2.9999999999999998e-92  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3679  methyl-accepting chemotaxis sensory transducer  53.57 
 
 
567 aa  340  4e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  50 
 
 
566 aa  340  4e-92  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  54.52 
 
 
555 aa  339  9.999999999999999e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  50.13 
 
 
562 aa  338  9.999999999999999e-92  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  47.83 
 
 
552 aa  339  9.999999999999999e-92  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  51.96 
 
 
562 aa  338  1.9999999999999998e-91  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  55.36 
 
 
570 aa  337  3.9999999999999995e-91  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1857  methyl-accepting chemotaxis sensory transducer  46.86 
 
 
561 aa  336  5.999999999999999e-91  Pectobacterium wasabiae WPP163  Bacteria  normal  0.769355  n/a   
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  54.66 
 
 
527 aa  337  5.999999999999999e-91  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  57.31 
 
 
555 aa  336  7e-91  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_011205  SeD_A4946  methyl-accepting chemotaxis protein I  53.72 
 
 
553 aa  335  2e-90  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.556415 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  53.3 
 
 
555 aa  334  3e-90  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_011080  SNSL254_A4887  methyl-accepting chemotaxis protein I  54.16 
 
 
553 aa  333  4e-90  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4939  methyl-accepting chemotaxis protein I  54.16 
 
 
553 aa  333  4e-90  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.188217  normal 
 
 
-
 
NC_012912  Dd1591_1535  methyl-accepting chemotaxis sensory transducer  53.8 
 
 
574 aa  333  7.000000000000001e-90  Dickeya zeae Ech1591  Bacteria  normal  0.241891  n/a   
 
 
-
 
NC_011094  SeSA_A4786  methyl-accepting chemotaxis protein I  53.46 
 
 
553 aa  333  7.000000000000001e-90  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.709187  normal 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  49.73 
 
 
554 aa  332  2e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  54.27 
 
 
542 aa  330  5.0000000000000004e-89  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1753  methyl-accepting chemotaxis protein III  50.8 
 
 
546 aa  330  6e-89  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  2.79367e-17 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  54.97 
 
 
589 aa  329  8e-89  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  50.8 
 
 
546 aa  328  1.0000000000000001e-88  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  50.8 
 
 
546 aa  328  1.0000000000000001e-88  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  50.8 
 
 
546 aa  328  1.0000000000000001e-88  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01390  hypothetical protein  50.8 
 
 
546 aa  328  1.0000000000000001e-88  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2983  methyl-accepting chemotaxis sensory transducer  50.88 
 
 
556 aa  328  2.0000000000000001e-88  Serratia proteamaculans 568  Bacteria  normal  0.96835  normal 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  46.27 
 
 
553 aa  327  3e-88  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  55.45 
 
 
586 aa  327  4.0000000000000003e-88  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_012912  Dd1591_2408  methyl-accepting chemotaxis sensory transducer  45.02 
 
 
557 aa  327  4.0000000000000003e-88  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2407  methyl-accepting chemotaxis sensory transducer  47.92 
 
 
555 aa  327  5e-88  Dickeya zeae Ech1591  Bacteria  normal  0.880863  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  56.59 
 
 
592 aa  325  1e-87  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  49.87 
 
 
559 aa  325  2e-87  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  50.27 
 
 
546 aa  325  2e-87  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  48.7 
 
 
567 aa  325  2e-87  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  50.27 
 
 
546 aa  324  3e-87  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1631  methyl-accepting chemotaxis protein  53.24 
 
 
579 aa  323  5e-87  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  53.67 
 
 
547 aa  323  5e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_012880  Dd703_0562  methyl-accepting chemotaxis sensory transducer  53.23 
 
 
570 aa  323  6e-87  Dickeya dadantii Ech703  Bacteria  decreased coverage  0.00821394  n/a   
 
 
-
 
NC_010465  YPK_1742  methyl-accepting chemotaxis sensory transducer  53.24 
 
 
579 aa  323  6e-87  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  50.27 
 
 
470 aa  323  6e-87  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  48.29 
 
 
551 aa  323  7e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2308  methyl-accepting chemotaxis sensory transducer  48.18 
 
 
560 aa  323  7e-87  Dickeya dadantii Ech703  Bacteria  normal  0.52721  n/a   
 
 
-
 
NC_009436  Ent638_0513  methyl-accepting chemotaxis sensory transducer  57.4 
 
 
586 aa  323  9.000000000000001e-87  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.00498581 
 
 
-
 
NC_012912  Dd1591_3580  methyl-accepting chemotaxis sensory transducer  48.46 
 
 
572 aa  322  9.999999999999999e-87  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  47.39 
 
 
552 aa  322  9.999999999999999e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  57.7 
 
 
615 aa  322  9.999999999999999e-87  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  57.7 
 
 
615 aa  322  9.999999999999999e-87  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  49.34 
 
 
579 aa  322  9.999999999999999e-87  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012917  PC1_2617  methyl-accepting chemotaxis sensory transducer  55.46 
 
 
573 aa  322  9.999999999999999e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.38785  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  45.58 
 
 
584 aa  322  9.999999999999999e-87  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1669  methyl-accepting chemotaxis sensory transducer  54.14 
 
 
560 aa  322  1.9999999999999998e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  53.89 
 
 
752 aa  322  1.9999999999999998e-86  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_012880  Dd703_2108  methyl-accepting chemotaxis sensory transducer  51.27 
 
 
556 aa  321  1.9999999999999998e-86  Dickeya dadantii Ech703  Bacteria  normal  0.0190315  n/a   
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  54.32 
 
 
596 aa  321  3e-86  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2609  methyl-accepting chemotaxis sensory transducer  45.74 
 
 
561 aa  321  3e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1940  methyl-accepting chemotaxis sensory transducer  56.23 
 
 
560 aa  321  3e-86  Pectobacterium wasabiae WPP163  Bacteria  normal  0.364705  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  53.8 
 
 
537 aa  320  3.9999999999999996e-86  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  55.38 
 
 
589 aa  320  3.9999999999999996e-86  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  48.12 
 
 
595 aa  320  3.9999999999999996e-86  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_009436  Ent638_2456  methyl-accepting protein IV  54.74 
 
 
533 aa  320  3.9999999999999996e-86  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  57.83 
 
 
598 aa  319  9e-86  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  57.01 
 
 
575 aa  319  1e-85  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_012880  Dd703_1507  methyl-accepting chemotaxis sensory transducer  53.44 
 
 
573 aa  318  1e-85  Dickeya dadantii Ech703  Bacteria  normal  0.273861  n/a   
 
 
-
 
NC_010498  EcSMS35_1298  methyl-accepting chemotaxis protein II  50.95 
 
 
553 aa  319  1e-85  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00038087 
 
 
-
 
NC_011149  SeAg_B3779  methyl-accepting chemotaxis protein  53.23 
 
 
547 aa  318  2e-85  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4877  methyl-accepting chemotaxis sensory transducer  45.9 
 
 
614 aa  318  2e-85  Delftia acidovorans SPH-1  Bacteria  normal  0.296639  normal 
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  50 
 
 
553 aa  318  2e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_04232  methyl-accepting chemotaxis protein I, serine sensor receptor  57.28 
 
 
551 aa  317  3e-85  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  48.92 
 
 
513 aa  317  3e-85  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_04198  hypothetical protein  57.28 
 
 
551 aa  317  3e-85  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4586  methyl-accepting chemotaxis protein I  52.17 
 
 
557 aa  317  4e-85  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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