More than 300 homologs were found in PanDaTox collection
for query gene PC1_1417 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  100 
 
 
554 aa  1113    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  87.36 
 
 
553 aa  958    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  51.41 
 
 
578 aa  455  1.0000000000000001e-126  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  51.7 
 
 
580 aa  446  1.0000000000000001e-124  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
583 aa  421  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  49.81 
 
 
592 aa  416  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  46.27 
 
 
589 aa  407  1.0000000000000001e-112  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  44.92 
 
 
559 aa  402  1e-111  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  45.73 
 
 
552 aa  404  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  48.08 
 
 
584 aa  401  9.999999999999999e-111  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
542 aa  397  1e-109  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  46.21 
 
 
537 aa  395  1e-109  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
569 aa  395  1e-108  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  48.2 
 
 
573 aa  386  1e-106  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  68.49 
 
 
598 aa  387  1e-106  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
556 aa  382  1e-105  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  46.5 
 
 
511 aa  381  1e-104  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  44.17 
 
 
584 aa  381  1e-104  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  45.59 
 
 
532 aa  379  1e-103  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0178  methyl-accepting chemotaxis sensory transducer  46.41 
 
 
581 aa  376  1e-103  Acidovorax ebreus TPSY  Bacteria  normal  0.62004  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  45.03 
 
 
586 aa  378  1e-103  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  47.02 
 
 
596 aa  376  1e-103  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4877  methyl-accepting chemotaxis sensory transducer  49.24 
 
 
614 aa  376  1e-103  Delftia acidovorans SPH-1  Bacteria  normal  0.296639  normal 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  44.53 
 
 
605 aa  379  1e-103  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  42.69 
 
 
543 aa  373  1e-102  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  65 
 
 
579 aa  375  1e-102  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  45.37 
 
 
559 aa  374  1e-102  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  44.38 
 
 
535 aa  372  1e-102  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  44.06 
 
 
605 aa  372  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_008782  Ajs_0160  methyl-accepting chemotaxis sensory transducer  46.21 
 
 
579 aa  374  1e-102  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  42.63 
 
 
554 aa  371  1e-101  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3618  methyl-accepting chemotaxis sensory transducer  43.44 
 
 
551 aa  370  1e-101  Pectobacterium wasabiae WPP163  Bacteria  normal  0.453306  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  40.71 
 
 
556 aa  369  1e-101  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  41.04 
 
 
554 aa  367  1e-100  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  44.98 
 
 
520 aa  367  1e-100  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
548 aa  367  1e-100  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  43.17 
 
 
586 aa  367  1e-100  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  55.19 
 
 
471 aa  367  1e-100  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  63.16 
 
 
527 aa  369  1e-100  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_008752  Aave_3880  methyl-accepting chemotaxis sensory transducer  44.49 
 
 
557 aa  365  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  40.33 
 
 
543 aa  365  1e-99  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  42.45 
 
 
549 aa  365  1e-99  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_010002  Daci_4878  methyl-accepting chemotaxis sensory transducer  42.39 
 
 
589 aa  363  3e-99  Delftia acidovorans SPH-1  Bacteria  normal  0.506831  normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  43.71 
 
 
513 aa  363  4e-99  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
560 aa  363  5.0000000000000005e-99  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  42.02 
 
 
551 aa  363  5.0000000000000005e-99  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  66.89 
 
 
515 aa  361  2e-98  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
560 aa  359  6e-98  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  41.91 
 
 
554 aa  359  6e-98  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
548 aa  358  1.9999999999999998e-97  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  45.28 
 
 
532 aa  357  2.9999999999999997e-97  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_008782  Ajs_2152  methyl-accepting chemotaxis sensory transducer  47.06 
 
 
589 aa  357  3.9999999999999996e-97  Acidovorax sp. JS42  Bacteria  normal  normal  0.0117525 
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  57.42 
 
 
653 aa  355  8.999999999999999e-97  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  57.42 
 
 
653 aa  355  8.999999999999999e-97  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1752  methyl-accepting chemotaxis sensory transducer  43.94 
 
 
523 aa  355  1e-96  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  42.49 
 
 
575 aa  354  2e-96  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_012912  Dd1591_1602  methyl-accepting chemotaxis sensory transducer  40.43 
 
 
554 aa  354  2e-96  Dickeya zeae Ech1591  Bacteria  normal  0.33331  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  39.65 
 
 
556 aa  354  2e-96  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  46.48 
 
 
537 aa  354  2e-96  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  42.64 
 
 
548 aa  353  4e-96  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
559 aa  353  5e-96  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  43.16 
 
 
513 aa  351  2e-95  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  60.42 
 
 
578 aa  351  2e-95  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  41.59 
 
 
540 aa  350  3e-95  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  43.58 
 
 
577 aa  350  3e-95  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  42.37 
 
 
552 aa  350  5e-95  Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  43.96 
 
 
595 aa  350  5e-95  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_012912  Dd1591_4048  methyl-accepting chemotaxis sensory transducer  41.34 
 
 
542 aa  349  7e-95  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  41.68 
 
 
553 aa  348  2e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  38.94 
 
 
556 aa  348  2e-94  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_008752  Aave_4703  methyl-accepting chemotaxis sensory transducer  62.5 
 
 
659 aa  347  3e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0107  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
559 aa  347  5e-94  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  55.56 
 
 
536 aa  346  5e-94  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
551 aa  346  8e-94  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  44.15 
 
 
589 aa  345  8.999999999999999e-94  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  39.33 
 
 
555 aa  345  1e-93  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  42.41 
 
 
572 aa  344  2e-93  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  39.13 
 
 
561 aa  344  2e-93  Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_009832  Spro_0080  methyl-accepting chemotaxis sensory transducer  50 
 
 
642 aa  344  2.9999999999999997e-93  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  43.94 
 
 
591 aa  344  2.9999999999999997e-93  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  51.42 
 
 
650 aa  343  5e-93  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_012791  Vapar_4183  methyl-accepting chemotaxis sensory transducer  45.37 
 
 
516 aa  342  1e-92  Variovorax paradoxus S110  Bacteria  normal  0.278563  n/a   
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  53.93 
 
 
508 aa  341  2e-92  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  41.34 
 
 
539 aa  341  2e-92  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  44.53 
 
 
591 aa  341  2e-92  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_012880  Dd703_0727  methyl-accepting chemotaxis sensory transducer  40.6 
 
 
559 aa  340  2.9999999999999998e-92  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  39.57 
 
 
555 aa  340  4e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  51.39 
 
 
651 aa  340  4e-92  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_012912  Dd1591_2086  methyl-accepting chemotaxis sensory transducer  48.83 
 
 
653 aa  340  5e-92  Dickeya zeae Ech1591  Bacteria  normal  0.0240769  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  51.72 
 
 
661 aa  337  1.9999999999999998e-91  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
559 aa  338  1.9999999999999998e-91  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  53.28 
 
 
580 aa  337  2.9999999999999997e-91  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  53.85 
 
 
649 aa  337  2.9999999999999997e-91  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  53.85 
 
 
649 aa  337  2.9999999999999997e-91  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_013421  Pecwa_4355  methyl-accepting chemotaxis sensory transducer  41.89 
 
 
540 aa  336  7e-91  Pectobacterium wasabiae WPP163  Bacteria  normal  0.31766  n/a   
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  54.47 
 
 
585 aa  335  9e-91  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  59.4 
 
 
585 aa  335  9e-91  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_008752  Aave_1960  methyl-accepting chemotaxis sensory transducer  62.46 
 
 
642 aa  335  9e-91  Acidovorax citrulli AAC00-1  Bacteria  normal  0.741418  normal  0.0148687 
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  57.77 
 
 
579 aa  335  1e-90  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007952  Bxe_B0129  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
511 aa  335  1e-90  Burkholderia xenovorans LB400  Bacteria  normal  0.469561  normal 
 
 
-
 
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