| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1960 |
|---|
| Symbol | |
|---|
| ID | 4669789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2130037 |
|---|
| End bp | 2131965 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639823170 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_970318 |
|---|
| Protein GI | 120610640 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.741418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0148687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACT GGATCGGCAA CCTGAAGTTT TCACGCAAGT TCGTGCTGAT CGGATGCATT
GCTTTCGCGA TGTTCCTCCT GCCTACCGTG TTGCTGATGC GCACCACGCT GGCCGACATC
CAGACGGCGC TGCAGGAACG CAACGGGCTG GCTCCGGCGC GCGAACTGCT CAAGCTGCTT
CAGCTGACCC AGCAACATCG CGGACTGTCG GCATCCCTGC TCGGGGGGAC GGACTCTGCC
GCGGCACCGC GCCAGGCCAA GCAGGCGGAG GTCGAGGCCT CCATCGGCCG CGCGAAGCAG
GTCCTCGCGG GGCTGGGCGA CAGCGCCCTG GGCCAGCGGC TCGACAGCAT CCAGGGCGAC
TGGAACACGC TGGCCTCCGG CGTGGCGGGC AAGACCTTGC GCGGCGCGGA CAGCAACCGC
ATGCACGCGG CGCTCATCGA GCGGATGCTC GGGCTCATCG ACGACGTGGC CAACAGCTCC
GGCCTGGCGC GCGATACCGA CATCCGGACG CATTACCTGC AGAAGGCCGT TCTGGGGCAG
TTGCCCCAGC TCACGGAATC GCTGGGCCAG ATGCGGGCGC GCGGCGCGCT GGTGCTGGCG
CGCGGCGAAG TCGCTCCGGA GGAGCGGGCG CGCATCGAGG CGCTGTCCGA CCGGGTGCGC
AAATACTACG GCGATGCCCG CAAGGCGCTC GAGCTGGCGG CCGGCGGCAG CCTGCCGGCC
ACGGTGGAGA AGGCCCGGGA CGCCGCGCTG GCCGCGGCCC AGGAAGGGTT CAAGCTGGCC
GACGACAACA TCGTGAAGGC CGACGTGTTG AGCATGCCGT CCACCGACTG GGTCGCGCGC
ATGACCCGCA TCATCGACAC CCAGTTCGAG CTGGTGGGCG TGTCGTTCGA TGTGCTGGAG
CAATCGCTGG ACAGCCAGAT CGCGCGGATG CGCCAGAGCA TGCTGGTGCT GGGGGCGGTG
CTGGCGGCGC TGGCGGCGGC GGCGCTGTGG ATCATGGCCA TGGTCACGCG CGCCACCACG
CGTTCCATCG ATGAGGCCGT GCGGATCGCC GAGGCCGTGG CGGACGGCGA CCTGACCGCG
CAGGTCGAGC CCCAGGGCCG CGACGAGGTG GCCCGGCTGC TGCACGCGCT CGCCGCCATG
ACCCGCAAGC TCGGGACGGT GGTGGGCACG GTGCGGCTCA ATGCCGAGAA CGTGGCCAGT
GCCAGCGTGC AGATCGCGCA GGGCAACGCC GACCTGAGCC AGCGCACCGA AAGCCAGGCC
AGCGCACTGG AGCAGACGGC TGCGTCCATG GAGGAGCTGG GCTCCACCGT ACGGCAGAAC
GCGGACAACG CGCGGCAGGC GGACCAGCTC GCGCGCAGCG CGGCCGGCGT GGCCGCGCAG
GGCGGCACCG TGGTGCAGCA GGTGGTGGAG ACGATGCGCG GCATCCATAC CAGTTCGGCG
CGCATCGGCG ACATCATCGG CGTGATCGAC GGCATCGCGT TCCAGACCAA CATCCTGGCG
CTGAACGCGG CCGTGGAGGC GGCCCGCGCG GGTGAGCAGG GCCGCGGCTT CGCGGTGGTC
GCGGGCGAGG TGCGCAGTCT CGCGCAGCGC AGCGCCAGCG CCGCCAAGGA GATCAAGGAA
CTGATCACGG CCAGTGTCGC CCAGGTGCAG AGCGGCACGG CACTGGTGGA TCAGGCCGGC
ACGACCATGA CCGAGATCGT GGATTCGATC CGCAAGGTGA GCGGCATCGT GGGCGAGATC
ACCTCCGCGA CCGTGGAGCA GAGCGAGGGC GTGGCCCAGG TGGGCGAGGC CGTGAGCCAG
ATGGACAACG CCACCCAGCA GAACGCGGCG CTGGTGGAGG AAAGTGCCGC GGCGGCCAGC
AGCCTGAAGT CGCAGGCCCA GCAGCTGGTC GATACCGTGG CCATGTTCCG GCTGAACGCG
AGCGCCTGA
|
|---|
| Protein sequence | MTHWIGNLKF SRKFVLIGCI AFAMFLLPTV LLMRTTLADI QTALQERNGL APARELLKLL
QLTQQHRGLS ASLLGGTDSA AAPRQAKQAE VEASIGRAKQ VLAGLGDSAL GQRLDSIQGD
WNTLASGVAG KTLRGADSNR MHAALIERML GLIDDVANSS GLARDTDIRT HYLQKAVLGQ
LPQLTESLGQ MRARGALVLA RGEVAPEERA RIEALSDRVR KYYGDARKAL ELAAGGSLPA
TVEKARDAAL AAAQEGFKLA DDNIVKADVL SMPSTDWVAR MTRIIDTQFE LVGVSFDVLE
QSLDSQIARM RQSMLVLGAV LAALAAAALW IMAMVTRATT RSIDEAVRIA EAVADGDLTA
QVEPQGRDEV ARLLHALAAM TRKLGTVVGT VRLNAENVAS ASVQIAQGNA DLSQRTESQA
SALEQTAASM EELGSTVRQN ADNARQADQL ARSAAGVAAQ GGTVVQQVVE TMRGIHTSSA
RIGDIIGVID GIAFQTNILA LNAAVEAARA GEQGRGFAVV AGEVRSLAQR SASAAKEIKE
LITASVAQVQ SGTALVDQAG TTMTEIVDSI RKVSGIVGEI TSATVEQSEG VAQVGEAVSQ
MDNATQQNAA LVEESAAAAS SLKSQAQQLV DTVAMFRLNA SA
|
|---|
| |