More than 300 homologs were found in PanDaTox collection
for query gene PC1_0113 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  67.98 
 
 
556 aa  735    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  100 
 
 
559 aa  1112    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  67.26 
 
 
556 aa  737    Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_013421  Pecwa_0107  methyl-accepting chemotaxis sensory transducer  82.11 
 
 
559 aa  897    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  66.78 
 
 
560 aa  703    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  66.49 
 
 
555 aa  691    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  57.78 
 
 
555 aa  594  1e-168  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4084  methyl-accepting chemotaxis sensory transducer  57.6 
 
 
555 aa  588  1e-167  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  57.45 
 
 
548 aa  586  1e-166  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  58.86 
 
 
548 aa  587  1e-166  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  54.01 
 
 
556 aa  578  1.0000000000000001e-163  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  55.95 
 
 
551 aa  572  1.0000000000000001e-162  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  56.02 
 
 
543 aa  559  1e-158  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  53.02 
 
 
556 aa  555  1e-157  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  57.48 
 
 
605 aa  556  1e-157  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  57.3 
 
 
605 aa  555  1e-156  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  53.7 
 
 
560 aa  544  1e-153  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4048  methyl-accepting chemotaxis sensory transducer  58.65 
 
 
542 aa  533  1e-150  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  52.12 
 
 
559 aa  514  1e-144  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3866  methyl-accepting chemotaxis sensory transducer  49.52 
 
 
545 aa  482  1e-135  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4053  methyl-accepting chemotaxis sensory transducer  48.96 
 
 
545 aa  471  1.0000000000000001e-131  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  51.02 
 
 
599 aa  469  1.0000000000000001e-131  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2325  methyl-accepting chemotaxis sensory transducer  52.52 
 
 
575 aa  431  1e-119  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.952839 
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  43.64 
 
 
584 aa  382  1e-105  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  44.3 
 
 
589 aa  371  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  57.41 
 
 
597 aa  367  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  44.1 
 
 
573 aa  364  3e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  58.08 
 
 
525 aa  356  7.999999999999999e-97  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  44.23 
 
 
556 aa  350  5e-95  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  42.02 
 
 
583 aa  348  2e-94  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  47.93 
 
 
622 aa  347  2e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  42.1 
 
 
586 aa  344  2e-93  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
554 aa  343  2.9999999999999997e-93  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  42.4 
 
 
586 aa  343  7e-93  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  42.27 
 
 
594 aa  342  9e-93  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  40.99 
 
 
559 aa  339  9e-92  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  57.43 
 
 
581 aa  339  9e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  39.45 
 
 
553 aa  339  9e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  42.51 
 
 
537 aa  338  9.999999999999999e-92  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  51.41 
 
 
579 aa  338  9.999999999999999e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_3767  methyl-accepting chemotaxis sensory transducer  42.78 
 
 
544 aa  339  9.999999999999999e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.155197  normal  0.170651 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  43.67 
 
 
613 aa  333  4e-90  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  62.2 
 
 
520 aa  330  6e-89  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  56.92 
 
 
578 aa  327  4.0000000000000003e-88  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_010678  Rpic_4051  methyl-accepting chemotaxis sensory transducer  43.02 
 
 
634 aa  327  5e-88  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4163  methyl-accepting chemotaxis sensory transducer  43.02 
 
 
634 aa  327  5e-88  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  59.6 
 
 
541 aa  325  1e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  40.81 
 
 
559 aa  324  2e-87  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  42.96 
 
 
547 aa  324  2e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  54.69 
 
 
585 aa  323  4e-87  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_007650  BTH_II0449  methyl-accepting chemotaxis protein  42.88 
 
 
562 aa  323  5e-87  Burkholderia thailandensis E264  Bacteria  normal  0.123732  n/a   
 
 
-
 
NC_006349  BMAA0152  methyl-accepting chemotaxis protein  42.94 
 
 
565 aa  322  9.999999999999999e-87  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0176  methyl-accepting chemotaxis protein  42.94 
 
 
565 aa  322  9.999999999999999e-87  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1029  methyl-accepting chemotaxis protein  42.1 
 
 
562 aa  322  9.999999999999999e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  0.815966  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
532 aa  322  9.999999999999999e-87  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  54.08 
 
 
519 aa  322  9.999999999999999e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A2620  methyl-accepting chemotaxis protein  42.94 
 
 
562 aa  322  9.999999999999999e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1321  methyl-accepting chemotaxis protein  42.94 
 
 
565 aa  322  9.999999999999999e-87  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2764  methyl-accepting chemotaxis protein  42.75 
 
 
562 aa  321  1.9999999999999998e-86  Burkholderia pseudomallei 668  Bacteria  normal  0.627836  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  55.65 
 
 
579 aa  321  1.9999999999999998e-86  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  46.76 
 
 
589 aa  322  1.9999999999999998e-86  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  41.35 
 
 
511 aa  321  1.9999999999999998e-86  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  41.29 
 
 
576 aa  321  1.9999999999999998e-86  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  42.31 
 
 
575 aa  321  1.9999999999999998e-86  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  40.64 
 
 
580 aa  321  1.9999999999999998e-86  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  42.01 
 
 
559 aa  321  1.9999999999999998e-86  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  54.83 
 
 
598 aa  320  5e-86  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_007952  Bxe_B0129  methyl-accepting chemotaxis sensory transducer  40.38 
 
 
511 aa  318  1e-85  Burkholderia xenovorans LB400  Bacteria  normal  0.469561  normal 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
578 aa  318  1e-85  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  42.39 
 
 
592 aa  317  3e-85  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  40.67 
 
 
584 aa  317  4e-85  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  55.86 
 
 
627 aa  317  4e-85  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_012917  PC1_0007  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.58 
 
 
636 aa  316  8e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  38.91 
 
 
554 aa  316  8e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  40.68 
 
 
543 aa  315  9.999999999999999e-85  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  56.17 
 
 
519 aa  315  9.999999999999999e-85  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  56.06 
 
 
611 aa  315  9.999999999999999e-85  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  53.94 
 
 
519 aa  315  9.999999999999999e-85  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.19 
 
 
515 aa  315  1.9999999999999998e-84  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  41.46 
 
 
513 aa  315  1.9999999999999998e-84  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  41.94 
 
 
539 aa  314  1.9999999999999998e-84  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  46.22 
 
 
591 aa  314  2.9999999999999996e-84  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  54.97 
 
 
520 aa  313  3.9999999999999997e-84  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  38.2 
 
 
554 aa  313  3.9999999999999997e-84  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
581 aa  313  3.9999999999999997e-84  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  47.02 
 
 
591 aa  313  3.9999999999999997e-84  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  56.88 
 
 
515 aa  313  4.999999999999999e-84  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_008752  Aave_0772  methyl-accepting chemotaxis sensory transducer  58.64 
 
 
612 aa  313  4.999999999999999e-84  Acidovorax citrulli AAC00-1  Bacteria  normal  0.343543  normal  0.663369 
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  57.58 
 
 
515 aa  312  7.999999999999999e-84  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  48.83 
 
 
598 aa  311  1e-83  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_008752  Aave_0940  methyl-accepting chemotaxis sensory transducer  48.32 
 
 
546 aa  312  1e-83  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000958657  normal  0.647876 
 
 
-
 
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  43.16 
 
 
515 aa  310  2.9999999999999997e-83  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_007908  Rfer_2354  methyl-accepting chemotaxis sensory transducer  52.82 
 
 
554 aa  310  2.9999999999999997e-83  Rhodoferax ferrireducens T118  Bacteria  normal  0.547249  n/a   
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  41.63 
 
 
536 aa  311  2.9999999999999997e-83  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  47.31 
 
 
661 aa  310  4e-83  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0006  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.85 
 
 
667 aa  310  4e-83  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
580 aa  310  5.9999999999999995e-83  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  40.07 
 
 
618 aa  310  5.9999999999999995e-83  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  38.05 
 
 
569 aa  309  6.999999999999999e-83  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1710  methyl-accepting chemotaxis protein  55.12 
 
 
517 aa  309  6.999999999999999e-83  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>