More than 300 homologs were found in PanDaTox collection
for query gene PC1_3910 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  100 
 
 
555 aa  1119    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  61.4 
 
 
555 aa  652    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4084  methyl-accepting chemotaxis sensory transducer  89.73 
 
 
555 aa  981    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  62.88 
 
 
560 aa  640    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  57.78 
 
 
559 aa  586  1e-166  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0107  methyl-accepting chemotaxis sensory transducer  56.53 
 
 
559 aa  582  1.0000000000000001e-165  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  52.24 
 
 
556 aa  538  1e-151  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  50.98 
 
 
556 aa  528  1e-149  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  52.95 
 
 
551 aa  528  1e-148  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  52.36 
 
 
548 aa  522  1e-147  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  51.72 
 
 
548 aa  518  1e-146  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  50.09 
 
 
556 aa  517  1.0000000000000001e-145  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  52.13 
 
 
560 aa  516  1.0000000000000001e-145  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4048  methyl-accepting chemotaxis sensory transducer  56.76 
 
 
542 aa  518  1.0000000000000001e-145  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  51.07 
 
 
559 aa  505  9.999999999999999e-143  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  49.37 
 
 
556 aa  503  1e-141  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  50.73 
 
 
543 aa  485  1e-135  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  51.54 
 
 
605 aa  482  1e-135  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  51.15 
 
 
605 aa  480  1e-134  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_012880  Dd703_3866  methyl-accepting chemotaxis sensory transducer  47.41 
 
 
545 aa  447  1.0000000000000001e-124  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4053  methyl-accepting chemotaxis sensory transducer  46.24 
 
 
545 aa  432  1e-120  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2325  methyl-accepting chemotaxis sensory transducer  50.87 
 
 
575 aa  423  1e-117  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.952839 
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  47.83 
 
 
599 aa  420  1e-116  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  63.11 
 
 
597 aa  369  1e-101  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  39.06 
 
 
589 aa  360  3e-98  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  41.3 
 
 
583 aa  343  5e-93  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
586 aa  342  7e-93  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  38.8 
 
 
553 aa  342  1e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  38.92 
 
 
554 aa  339  9e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  40.55 
 
 
594 aa  338  9.999999999999999e-92  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  37.77 
 
 
584 aa  335  1e-90  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  41.41 
 
 
573 aa  335  1e-90  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  41.15 
 
 
613 aa  333  4e-90  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  54.15 
 
 
585 aa  331  2e-89  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  40.52 
 
 
586 aa  331  2e-89  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  40 
 
 
543 aa  331  3e-89  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  45.42 
 
 
622 aa  328  2.0000000000000001e-88  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  39.11 
 
 
532 aa  326  6e-88  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  38.97 
 
 
559 aa  325  1e-87  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  56.87 
 
 
556 aa  325  2e-87  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1029  methyl-accepting chemotaxis protein  40.58 
 
 
562 aa  324  3e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  0.815966  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
537 aa  323  3e-87  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_009075  BURPS668_A2764  methyl-accepting chemotaxis protein  40.58 
 
 
562 aa  323  6e-87  Burkholderia pseudomallei 668  Bacteria  normal  0.627836  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2620  methyl-accepting chemotaxis protein  41.42 
 
 
562 aa  322  9.000000000000001e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  58.44 
 
 
525 aa  322  9.999999999999999e-87  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  50.14 
 
 
559 aa  321  1.9999999999999998e-86  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  40.63 
 
 
559 aa  321  1.9999999999999998e-86  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  56.68 
 
 
578 aa  320  3.9999999999999996e-86  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_009079  BMA10247_A0176  methyl-accepting chemotaxis protein  41.23 
 
 
565 aa  318  2e-85  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0152  methyl-accepting chemotaxis protein  41.23 
 
 
565 aa  318  2e-85  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  49.09 
 
 
579 aa  318  2e-85  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  38.63 
 
 
569 aa  318  2e-85  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_1321  methyl-accepting chemotaxis protein  41.23 
 
 
565 aa  318  2e-85  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  47.07 
 
 
579 aa  318  2e-85  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012912  Dd1591_3613  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
530 aa  317  3e-85  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  58.06 
 
 
515 aa  316  6e-85  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  60.07 
 
 
520 aa  316  8e-85  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  44.49 
 
 
579 aa  315  9.999999999999999e-85  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_007650  BTH_II0449  methyl-accepting chemotaxis protein  40.56 
 
 
562 aa  314  1.9999999999999998e-84  Burkholderia thailandensis E264  Bacteria  normal  0.123732  n/a   
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  51.3 
 
 
591 aa  314  1.9999999999999998e-84  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  52.48 
 
 
519 aa  313  3.9999999999999997e-84  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  41.85 
 
 
581 aa  313  4.999999999999999e-84  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_013421  Pecwa_0495  methyl-accepting chemotaxis sensory transducer  38.71 
 
 
525 aa  311  1e-83  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  54.38 
 
 
557 aa  311  2.9999999999999997e-83  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3489  methyl-accepting chemotaxis sensory transducer  39.77 
 
 
530 aa  311  2.9999999999999997e-83  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  54.38 
 
 
557 aa  311  2.9999999999999997e-83  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  55.19 
 
 
541 aa  310  2.9999999999999997e-83  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  40.71 
 
 
552 aa  310  4e-83  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  39.93 
 
 
576 aa  310  5.9999999999999995e-83  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  39.41 
 
 
596 aa  308  1.0000000000000001e-82  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.41 
 
 
566 aa  309  1.0000000000000001e-82  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  39.42 
 
 
548 aa  308  1.0000000000000001e-82  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  54.08 
 
 
557 aa  308  1.0000000000000001e-82  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  47.21 
 
 
573 aa  308  2.0000000000000002e-82  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_010002  Daci_3767  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
544 aa  308  2.0000000000000002e-82  Delftia acidovorans SPH-1  Bacteria  normal  0.155197  normal  0.170651 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  37.63 
 
 
578 aa  308  2.0000000000000002e-82  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_012880  Dd703_1719  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.6 
 
 
517 aa  307  3e-82  Dickeya dadantii Ech703  Bacteria  unclonable  0.00000712436  n/a   
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  39.92 
 
 
547 aa  307  3e-82  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  53.37 
 
 
515 aa  307  4.0000000000000004e-82  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  48.75 
 
 
580 aa  306  4.0000000000000004e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.37 
 
 
515 aa  306  5.0000000000000004e-82  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  40.26 
 
 
513 aa  306  5.0000000000000004e-82  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0416  methyl-accepting chemotaxis sensory transducer  39.92 
 
 
525 aa  306  6e-82  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.158805  n/a   
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  50.46 
 
 
519 aa  306  6e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  46.93 
 
 
558 aa  306  7e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1586  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
553 aa  306  9.000000000000001e-82  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  39.1 
 
 
554 aa  305  2.0000000000000002e-81  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4051  methyl-accepting chemotaxis sensory transducer  51.4 
 
 
634 aa  304  3.0000000000000004e-81  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4163  methyl-accepting chemotaxis sensory transducer  51.4 
 
 
634 aa  304  3.0000000000000004e-81  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  51.78 
 
 
598 aa  303  4.0000000000000003e-81  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  39 
 
 
511 aa  303  4.0000000000000003e-81  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  38.01 
 
 
595 aa  303  5.000000000000001e-81  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  39.69 
 
 
549 aa  303  6.000000000000001e-81  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  52.06 
 
 
519 aa  302  8.000000000000001e-81  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  51.36 
 
 
520 aa  301  1e-80  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  39.26 
 
 
575 aa  302  1e-80  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  52.06 
 
 
589 aa  302  1e-80  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  38.86 
 
 
580 aa  301  1e-80  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  42.71 
 
 
513 aa  301  2e-80  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  45.3 
 
 
555 aa  301  3e-80  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>