| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4188 |
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| Symbol | |
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| ID | 7971925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4431875 |
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| End bp | 4433575 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794774 |
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| Product | methyl-accepting chemotaxis sensory transducer with Cache sensor |
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| Protein accession | YP_002946067 |
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| Protein GI | 239817157 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.210427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAACC GCTTGAATCC GCGCGCCCTC AGCATCGGGC AGAAGCTCGG GCTGCTCACG
GCCAGCGCCA TCCTGGGCGT GGCGGCGCTG ACGGCCCTTT TCCTGGTTTC TGAGCGCAAG
CTCATCCTGG AAGAGCGGCA GGCCAGCGTG CGCCAGGTGG TGGAAAGCGC GCATGGCCTG
CTGGTCCACT ACCACGCGCT CGCCGCCAAG GGCACGCTGA CCGAGCCGCA GGCCAAGGAG
CAGGCGATGC AGGCGATCCG CGGCCTGCGC TACAGCGGCA GCGAGTATTT CTGGATCAAC
GACATGCAGC CGCGCATGCT GATGCACCCG ATCAGCCCGG CGCTCGAGAA CAAGGACCTC
TCGTCCAACA AGGATGCCAC CGGCAAGCGG CTGTTCGTCG CCTTCGTCGA CACCGTCAAG
GCCGATGGTG CGGGCTTCGT TCCCTACCTC TGGGCCAAGC CGGGCAGCGA CAAGCCGGTG
CCCAAGGTCT CGTACGTGAA GGGCTTCGAG CCCTGGGGCT GGATCATCGG CTCGGGCGTC
TACGTGGACA CGGTACAGGC CACCATCATG AGCCGGGTCA TCGGCCTGTC GATCAGTGCG
CTGGTGCTGG CCGCGGCACT CTTCGCGCTC GGCTGGGCGA TCTCGCGCGG CCTGCTGAAA
CAGCTCGGCG GCGAACCGAT GGTCACGGCC GGCATCGCGC ACCGCATCGC CGAGGGCGAC
CTGGCGGTCC GCATCGACCT GAAGCACGGC GACCAGGCGA GCCTGCTGCA CGCGGTCCAG
GCCATGCGCG ACAGCCTGGC CAAGGTGGTG GGCGAAGTGC GCCACGGCAC CGATGCGATC
GCGACGGCTT CCGGGCAGAT TGCCGCGGGC AACCAGGACC TGTCTTCGCG CACCGAGGAG
CAGGCCAGTT CGCTCGAGCA GACGGCGGCC TCGATGGAAG AGCTCACGAG CACCGTCAAG
CAGAACGCCG ACAACGCACG CCAGGCCAAC CAGCTGGCGG TCTCCGCCTC TGAAGTGGCG
GTGCGCGGCG GCGGCGTGGT CAGCCAGGTG GTGGACACCA TGGGCTCGAT CAACAGCTCG
TCCAAGAAGA TCGTCGACAT CATCGGCGTG ATCGACGGCA TCGCGTTCCA GACCAACATC
CTTGCGCTCA ATGCTGCTGT CGAAGCCGCA AGAGCCGGCG AGCAGGGAAG AGGCTTCGCA
GTCGTCGCCT CCGAAGTGCG CAACCTCGCG CAGCGCTCAG GCGCCGCCGC CAAGGAAATC
AAGGGCCTGA TCGACGACTC GGTCGACAAG GTCGAGGCCG GCAGCCGCCA GGTGGCCGAA
GCGGGCCGCA CGATGGACGA GATCGTCGAC AGCGTCAAGC GCGTGACCGA CATCATGGGC
GAGATCACGG CGGCCAGCCA GGAGCAGAGC ACCGGCATCG AGCAGGTGAA CCAGGCGATT
GCCCAGATGG ACCAGGTCAC GCAGCAGAAC GCGGCGCTGG TGGAAGAAGC GGCGGCTGCG
GCGCAGTCGA TGCAGGAGCA GGCCGCGAGC CTGGTGGCGT CGGTCAGCGT GTTCAGGCTC
GAAGCCGGCA GCGCCGCTGC CACGCCCCCG GCTTCCGAGA AGTCCCGGCG CCTCGCGCCG
GGCAAGAAGA CCCACGAAGC CCCCGCGTCC CCGCAGCTGG CCATGGCCGG CGCGGCCGGT
GGCGGGTGGC CCGAGTTCTA G
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| Protein sequence | MFNRLNPRAL SIGQKLGLLT ASAILGVAAL TALFLVSERK LILEERQASV RQVVESAHGL
LVHYHALAAK GTLTEPQAKE QAMQAIRGLR YSGSEYFWIN DMQPRMLMHP ISPALENKDL
SSNKDATGKR LFVAFVDTVK ADGAGFVPYL WAKPGSDKPV PKVSYVKGFE PWGWIIGSGV
YVDTVQATIM SRVIGLSISA LVLAAALFAL GWAISRGLLK QLGGEPMVTA GIAHRIAEGD
LAVRIDLKHG DQASLLHAVQ AMRDSLAKVV GEVRHGTDAI ATASGQIAAG NQDLSSRTEE
QASSLEQTAA SMEELTSTVK QNADNARQAN QLAVSASEVA VRGGGVVSQV VDTMGSINSS
SKKIVDIIGV IDGIAFQTNI LALNAAVEAA RAGEQGRGFA VVASEVRNLA QRSGAAAKEI
KGLIDDSVDK VEAGSRQVAE AGRTMDEIVD SVKRVTDIMG EITAASQEQS TGIEQVNQAI
AQMDQVTQQN AALVEEAAAA AQSMQEQAAS LVASVSVFRL EAGSAAATPP ASEKSRRLAP
GKKTHEAPAS PQLAMAGAAG GGWPEF
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