| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4185 |
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| Symbol | |
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| ID | 7971922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4427764 |
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| End bp | 4429503 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794771 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_002946064 |
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| Protein GI | 239817154 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.356775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATGGT TCCAGCAGCT TCGCGTCGCC GTCAGGCTGG TGCTCAGCTT TCTCGTGGTC
GCGGCGGTGG GTGCCGCGGT GAGCGGGATC GGCATCATTC AGATGGGGCG CATCAACGCC
TCGACTGAAG ACCTCTACAG CCATGACCTG CGCGCGATCA AGGCCGTGCA GGCGGCCAAC
ATCCAGCTGC TCGACGCGAG CCGCGCCCAG ATGGGCCTGC TGTCGGCCGG CACCAAGGGC
GAGCGCAACA CCGGCTTCAC GGAGTTGAAG AACGCCGTGA AGGCGCTCGA ATCGAACGTG
GCCGAGGTCA AGCCCCTGCT CGAGGAGACG CCCGAAGGCC GCGAACTCAG CGAGCAGTAC
CAGCGCCTGA TGCCGCCGCT GCGAAAGCAC CTGGCCGATT TTGCCGACCT GATCGCCAAG
CAGTCGCTGG ACAGCTCGCA GTTCGAAGGC AGCGTGCCGC AGGAGAGCGA GCAGCTGCTC
AAGGAGTCGC GCGCGCTGGA GAAAGTGCTC CAGCGCATGG TGGCCTACAG CGACCAGCAG
GCCAAGGACG GCATGGAAGA CGCCGCACGC ACCTTCAAGA CCTCGCGCCT GCTGATGGTG
CTGATGGCGC TGGCCGGCAT CGCCATCAGC GTGGGGCTCG GCGTGGTGGT GGCACGGCTC
CTGGCGCGGC AGTTGGGCGG CGAGCCCGGC TACGCCGCCG ACGTGGTCGG CCGCATCGCG
AACGGCGACC TGAGCGAAAG CGTGCAGGCC CGCTCGGCCC GCGCCGGCAG TCTCTTGTTC
TCGATCAAGC GCATGCAGGA CCAGCTGACC GAGGTCGTGG TGCGGATCAA GAGTTCCAGC
GATGCGATTG CCACGGCTTC GGGCGAGATC GCGGCGGGCA ACCAGGACCT TTCGTCGCGC
ACCGAGGAGC AGGCCAGCTC GCTCGAGCAG ACGGCGGCCT CGATGGAAGA GCTGACCTCC
ACGGTGAAGC AGAACGCGGA CAACGCGCGC CAAGCGAACC AGCTGGCCTT GTCTGCCTCC
GAAGTGGCCG TGAAGGGCGG CAACGTGGTG GGGCAGGTGG TGGACACCAT GGCCTCGATC
AATGCGTCGT CCAAGAAGAT CGTCGACATC ATCGGCGTGA TCGACGGCAT TGCGTTCCAG
ACCAACATCC TGGCTTTGAA TGCCGCGGTG GAAGCGGCAC GTGCCGGTGA GCAGGGCCGA
GGCTTCGCAG TGGTCGCTTC CGAAGTCCGC AACCTCGCCC AGCGCTCAGG CGCCGCCGCC
AAGGAAATCA AGGGCCTGAT CGACGACTCC GTCGGCAAGG TCGACATGGG CAGCGCCCTC
GTCGGCGAAG CCGGCAAGAC CATGGCCGAG ATCGTGGGCA GCGTGAAACG CGTGACCGAC
ATCATCGGAG AGATCACGGC CGCGAGCCAG GAGCAGAGCA CGGGCATCGA GCAGGTGAAC
CAGGCGATTG CGCAGATGGA CCAGGTGACG CAGCAGAACG CGGCGCTGGT GGAAGAGGCG
GCGGCTGCGG CGCAGTCGAT GCAGGAGCAG GCCGCGAGCC TGGTGGAAGC CGTGAGCGTG
TTCAGGCTCG AGGGCGCGGC CCCAACCCTG CATGCGCAAG CACCGCGCAC GCCCGAGGCG
CCGGTCCGGC CGCTCGCGAA GCCGCGCAAG AAGGAAGCCA TGGCTTCCGC TCCGCCGCTG
ACCCTGGCCG GCGGCGCCGC GGGTGCCGCA GGTGCAACGG GCGATTGGAC CGAGTTCTAG
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| Protein sequence | MKWFQQLRVA VRLVLSFLVV AAVGAAVSGI GIIQMGRINA STEDLYSHDL RAIKAVQAAN
IQLLDASRAQ MGLLSAGTKG ERNTGFTELK NAVKALESNV AEVKPLLEET PEGRELSEQY
QRLMPPLRKH LADFADLIAK QSLDSSQFEG SVPQESEQLL KESRALEKVL QRMVAYSDQQ
AKDGMEDAAR TFKTSRLLMV LMALAGIAIS VGLGVVVARL LARQLGGEPG YAADVVGRIA
NGDLSESVQA RSARAGSLLF SIKRMQDQLT EVVVRIKSSS DAIATASGEI AAGNQDLSSR
TEEQASSLEQ TAASMEELTS TVKQNADNAR QANQLALSAS EVAVKGGNVV GQVVDTMASI
NASSKKIVDI IGVIDGIAFQ TNILALNAAV EAARAGEQGR GFAVVASEVR NLAQRSGAAA
KEIKGLIDDS VGKVDMGSAL VGEAGKTMAE IVGSVKRVTD IIGEITAASQ EQSTGIEQVN
QAIAQMDQVT QQNAALVEEA AAAAQSMQEQ AASLVEAVSV FRLEGAAPTL HAQAPRTPEA
PVRPLAKPRK KEAMASAPPL TLAGGAAGAA GATGDWTEF
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