| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4189 |
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| Symbol | |
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| ID | 7971926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4433662 |
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| End bp | 4435341 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794775 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_002946068 |
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| Protein GI | 239817158 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACC TCAAGATCGG CACGCGCCTG GGCATCGGTT TTGCGCTGGT GCTGGCGCTC
ATGGCCTGCA TCGCGGGCAT TGGCGTGTTC CGCCTGCAGG GCGTGGGCGA CGCGGTGCAG
GAGATGGTGC AGCGCTCGCT CGTGAAGGAG CGCCTGGCCG CGAACTGGCT GCTCAACACC
AGCAGCAACA GCGTGCGCAC CTTCGCGCTG GTCAAGAGCA ACGATGCGGA GGTGCAGGAC
TACCTGCAAA AGCAGATGAG CAAGACCAGC GCCGGCATCT CCGAGACGCA GGCCAAGCTC
GAGGCCATGC TGGATTCGCC CGAGGAGCAG GCGATCAGCG CCGACATCAA GGAAAAGCGC
AGCCAGTACG TGGGCCTGCG CAACACCATC CTCAAGCTCA AGGCCGAAGG CAAGCAGGAG
GAGGCGGCAG CGCTCACCAA CGGCAAGCTG GTGCCGATGC TCGAGGTCTA CGACGCGAGC
ATCCGCGGCA TGCTGACGCA CCAGGCCGAG CGCATCGACA AGGCCGCCGA TGCGGTGGAC
AGCCTGAACC GCGCGGGCCG CATGAACGTG ATCGTGCTGG CCATGGCTGC GCTGCTGCTC
GGCGGGGTGC TGGCATGGCT CCTGACGCGC AGCATCACGC GGCCGCTGAA CGAAGCCGTG
CGCGTGGCGC AGACGGTGGC GGACGGCGAC CTGACCAGCC GCATCGAATC GTCGTCCCGC
GACGAGACGG GCCAGCTGAT GCTGGCATTG AAGAACATGA ATGCGAGCCT GGCCACCGTG
GTGAGCGGCG TGCGACAAGG TACCGATGCG ATCGCCACGG CTTCGGGCGA GATCGCGGCG
GGCAACCAGG ACCTTTCGTC GCGCACCGAG GAGCAGGCCA GCTCGCTCGA GCAGACGGCG
GCCTCGATGG AAGAACTGAC CTCCACGGTG AAGCAGAACG CGGACAACGC GCGGCAGGCG
AATCAGCTCG CGCTCTCGGC CTCCGAAGTG GCAGTGAAGG GCGGCAATGT GGTGGGGCAG
GTGGTCGACA CCATGGCCTC GATCAATGCG TCCTCCAAGA AGATCGTCGA CATCATCGGC
GTGATCGATG GCATCGCGTT CCAGACCAAC ATCCTTGCGC TCAATGCCGC GGTGGAAGCG
GCACGTGCCG GCGAGCAGGG CCGCGGCTTC GCAGTCGTCG CTTCCGAAGT GCGCAACCTG
GCCCAGCGCT CAGGCGCAGC CGCCAAGGAA ATCAAGGGCC TGATCGACGA CTCCGTCGGC
AAGGTCGACA TGGGCAGCGC CCTCGTGGGC GAAGCCGGCA AGACCATGGC CGAGATCGTG
GGCAGCGTGA AACGCGTGAC CGACATCATC GGGGAGATCA CGGCCGCGAG CCAGGAGCAG
AGCACGGGCA TCGAGCAGGT GAACCAGGCG ATTGCGCAGA TGGACCAGGT GACGCAGCAG
AACGCGGCGC TGGTGGAAGA AGCGGCCGCT GCAGCGCAGT CGATGCAGGA GCAGGCCGCG
AGCCTGGTCG GGGCCGTCAG CGTGTTCAGG CTGGATGGCG CACCGGCCGC TCGTTCCGGG
CTCGCATTCG CCGCGCCGAA GGCCCTGCGG CCGGCGCCGG CCAGGAAGAG CGAGACCACC
GCGGCCCCGC AGCTGGCCGT TGCCGCCAGC ACGGCAAATG GCGATTGGAC GGAATTTTGA
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| Protein sequence | MKNLKIGTRL GIGFALVLAL MACIAGIGVF RLQGVGDAVQ EMVQRSLVKE RLAANWLLNT
SSNSVRTFAL VKSNDAEVQD YLQKQMSKTS AGISETQAKL EAMLDSPEEQ AISADIKEKR
SQYVGLRNTI LKLKAEGKQE EAAALTNGKL VPMLEVYDAS IRGMLTHQAE RIDKAADAVD
SLNRAGRMNV IVLAMAALLL GGVLAWLLTR SITRPLNEAV RVAQTVADGD LTSRIESSSR
DETGQLMLAL KNMNASLATV VSGVRQGTDA IATASGEIAA GNQDLSSRTE EQASSLEQTA
ASMEELTSTV KQNADNARQA NQLALSASEV AVKGGNVVGQ VVDTMASINA SSKKIVDIIG
VIDGIAFQTN ILALNAAVEA ARAGEQGRGF AVVASEVRNL AQRSGAAAKE IKGLIDDSVG
KVDMGSALVG EAGKTMAEIV GSVKRVTDII GEITAASQEQ STGIEQVNQA IAQMDQVTQQ
NAALVEEAAA AAQSMQEQAA SLVGAVSVFR LDGAPAARSG LAFAAPKALR PAPARKSETT
AAPQLAVAAS TANGDWTEF
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