More than 300 homologs were found in PanDaTox collection
for query gene PC1_4072 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  82.41 
 
 
553 aa  856    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0727  methyl-accepting chemotaxis sensory transducer  64.21 
 
 
559 aa  656    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  100 
 
 
540 aa  1082    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  63.85 
 
 
561 aa  655    Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  82.78 
 
 
555 aa  865    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  64.21 
 
 
552 aa  646    Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_013421  Pecwa_4355  methyl-accepting chemotaxis sensory transducer  91.81 
 
 
540 aa  956    Pectobacterium wasabiae WPP163  Bacteria  normal  0.31766  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  56.23 
 
 
554 aa  548  1e-154  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  56.23 
 
 
554 aa  547  1e-154  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  52.9 
 
 
554 aa  530  1e-149  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1602  methyl-accepting chemotaxis sensory transducer  51.99 
 
 
554 aa  508  9.999999999999999e-143  Dickeya zeae Ech1591  Bacteria  normal  0.33331  n/a   
 
 
-
 
NC_011205  SeD_A3572  methyl-accepting chemotaxis protein II  46.21 
 
 
522 aa  414  1e-114  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.258237 
 
 
-
 
NC_011094  SeSA_A3406  methyl-accepting chemotaxis protein II  46.21 
 
 
522 aa  414  1e-114  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.779837  normal 
 
 
-
 
NC_011149  SeAg_B3402  methyl-accepting chemotaxis protein II  46.21 
 
 
522 aa  414  1e-114  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3510  methyl-accepting chemotaxis protein II  45.95 
 
 
521 aa  412  1e-113  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.000000000027417 
 
 
-
 
NC_011080  SNSL254_A3476  methyl-accepting chemotaxis protein II  45.95 
 
 
521 aa  410  1e-113  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.692076  normal 
 
 
-
 
NC_009436  Ent638_3526  methyl-accepting chemotaxis sensory transducer  44.98 
 
 
519 aa  400  9.999999999999999e-111  Enterobacter sp. 638  Bacteria  normal  0.398255  normal  0.520422 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  44.94 
 
 
595 aa  379  1e-104  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  45.75 
 
 
569 aa  378  1e-103  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2119  methyl-accepting chemotaxis sensory transducer  41.28 
 
 
549 aa  370  1e-101  Enterobacter sp. 638  Bacteria  normal  normal  0.164628 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  44.25 
 
 
543 aa  366  1e-100  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  43.04 
 
 
553 aa  362  6e-99  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  41.29 
 
 
583 aa  359  9e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  44.94 
 
 
592 aa  357  1.9999999999999998e-97  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  41.59 
 
 
554 aa  357  3.9999999999999996e-97  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  42.83 
 
 
559 aa  355  8.999999999999999e-97  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  41.88 
 
 
551 aa  350  4e-95  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  43.94 
 
 
586 aa  348  2e-94  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  47.34 
 
 
559 aa  347  3e-94  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  44.53 
 
 
575 aa  346  6e-94  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  42.83 
 
 
548 aa  344  2.9999999999999997e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3618  methyl-accepting chemotaxis sensory transducer  41.7 
 
 
551 aa  342  9e-93  Pectobacterium wasabiae WPP163  Bacteria  normal  0.453306  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  41.02 
 
 
578 aa  342  1e-92  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
520 aa  340  4e-92  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_011992  Dtpsy_0178  methyl-accepting chemotaxis sensory transducer  44.38 
 
 
581 aa  337  1.9999999999999998e-91  Acidovorax ebreus TPSY  Bacteria  normal  0.62004  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  41.7 
 
 
537 aa  338  1.9999999999999998e-91  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  40.69 
 
 
580 aa  338  1.9999999999999998e-91  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  39.41 
 
 
556 aa  336  5.999999999999999e-91  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  42.61 
 
 
584 aa  336  5.999999999999999e-91  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0160  methyl-accepting chemotaxis sensory transducer  56.53 
 
 
579 aa  335  1e-90  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  55.71 
 
 
572 aa  335  2e-90  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  43.26 
 
 
650 aa  333  3e-90  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  40.31 
 
 
552 aa  334  3e-90  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  40.37 
 
 
556 aa  334  3e-90  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  41.35 
 
 
548 aa  333  4e-90  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  41.11 
 
 
565 aa  333  7.000000000000001e-90  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  46.81 
 
 
596 aa  332  1e-89  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  39.88 
 
 
556 aa  332  1e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
598 aa  331  2e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
586 aa  330  3e-89  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  44.96 
 
 
577 aa  330  4e-89  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  40.2 
 
 
511 aa  330  5.0000000000000004e-89  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0409  methyl-accepting chemotaxis sensory transducer  42.67 
 
 
585 aa  328  2.0000000000000001e-88  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
549 aa  327  3e-88  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  50.57 
 
 
661 aa  327  3e-88  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  51.1 
 
 
566 aa  324  2e-87  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_011992  Dtpsy_1752  methyl-accepting chemotaxis sensory transducer  40.77 
 
 
523 aa  324  2e-87  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  41.34 
 
 
584 aa  324  2e-87  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  53.63 
 
 
651 aa  323  3e-87  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  50 
 
 
615 aa  323  4e-87  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  49.87 
 
 
562 aa  323  4e-87  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  50 
 
 
615 aa  323  4e-87  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  39.53 
 
 
556 aa  323  4e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  39.1 
 
 
589 aa  323  5e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  41.14 
 
 
570 aa  322  9.999999999999999e-87  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_009436  Ent638_2100  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
512 aa  322  9.999999999999999e-87  Enterobacter sp. 638  Bacteria  normal  0.0381834  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  58.22 
 
 
622 aa  322  9.999999999999999e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  50.14 
 
 
628 aa  322  1.9999999999999998e-86  Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  46.67 
 
 
542 aa  321  1.9999999999999998e-86  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.79 
 
 
584 aa  321  1.9999999999999998e-86  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  42.42 
 
 
513 aa  321  1.9999999999999998e-86  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  45.35 
 
 
535 aa  320  3e-86  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4301  methyl-accepting chemotaxis sensory transducer  42.5 
 
 
587 aa  320  3e-86  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  37.62 
 
 
543 aa  321  3e-86  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  41.7 
 
 
548 aa  320  6e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  56.92 
 
 
585 aa  319  9e-86  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_012791  Vapar_4183  methyl-accepting chemotaxis sensory transducer  43.16 
 
 
516 aa  318  1e-85  Variovorax paradoxus S110  Bacteria  normal  0.278563  n/a   
 
 
-
 
NC_008752  Aave_1343  methyl-accepting chemotaxis sensory transducer  42.03 
 
 
620 aa  318  1e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  0.244601  normal  0.213177 
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  42.11 
 
 
532 aa  318  1e-85  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  42.17 
 
 
513 aa  318  2e-85  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  49.18 
 
 
653 aa  318  2e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  59.44 
 
 
584 aa  318  2e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2095  methyl-accepting chemotaxis sensory transducer  43.41 
 
 
520 aa  317  3e-85  Ralstonia pickettii 12J  Bacteria  normal  0.649492  normal  0.265934 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  55.52 
 
 
653 aa  317  3e-85  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
653 aa  317  3e-85  Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
539 aa  317  3e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  55.52 
 
 
653 aa  317  3e-85  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3723  methyl-accepting chemotaxis sensory transducer  48.74 
 
 
539 aa  317  3e-85  Dickeya zeae Ech1591  Bacteria  normal  0.359916  n/a   
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  40.08 
 
 
605 aa  316  6e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_012880  Dd703_1806  methyl-accepting chemotaxis sensory transducer  52.72 
 
 
652 aa  316  7e-85  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  45.54 
 
 
508 aa  316  8e-85  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  50.91 
 
 
628 aa  315  9.999999999999999e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0227  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
592 aa  315  9.999999999999999e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1771  methyl-accepting chemotaxis sensory transducer  43.41 
 
 
520 aa  315  9.999999999999999e-85  Ralstonia pickettii 12D  Bacteria  normal  normal  0.841752 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  50.14 
 
 
527 aa  315  9.999999999999999e-85  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  48.7 
 
 
573 aa  314  1.9999999999999998e-84  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_010002  Daci_0172  methyl-accepting chemotaxis sensory transducer  43.45 
 
 
550 aa  315  1.9999999999999998e-84  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  55.21 
 
 
557 aa  314  1.9999999999999998e-84  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  55.03 
 
 
537 aa  315  1.9999999999999998e-84  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  55.21 
 
 
557 aa  314  1.9999999999999998e-84  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
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