| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3123 |
|---|
| Symbol | |
|---|
| ID | 8531532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 3401867 |
|---|
| End bp | 3403534 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_003260472 |
|---|
| Protein GI | 261822366 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000142041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTA TTAAAAATAT TGCCATCAGA ACCGCTATGC TATGGGTGCT GGGCATTTTT
TGTGTTCTTT GGGGGGGTGT ATCGATATAT ACCCTGTTCT CTTTTAAAGA GATGACTACA
ACCTCAAAAA CCAGCACCTT GCTGGTTCAG AACATGAATT TCATCAACCA GGGCAACGAT
CAATACTTCC GTATGGTAAC CCGTCTGGCG CGTGCCGTAG ATGCGCGTCG CAGTGGTGAT
AATGCTACCG CTGATAAAGA GCAGGCCTCT GCTCTCGTCG CGCTGGATAA ACTGAAGTCT
GATTTGGTGG CGTTTAATGC CATCGATCAT GCGGGTCTGG ATAATGCTCT GGTGCAGGCT
GTCAGTCGTG ACTGGAATAG TCTGGTTGTT CAAGGTGTTG AACCGCTTTA TCAAAAGGCT
GTTGCCAACG CGCTGGACGA TTACCAAAAT CAGGCCAAGA ATATTGTGCC GCCATTGAGC
CGTCAGTTTG GCGCGTCCCT ATCCGCATTC AGTAGCGCCA GCGCAGAGAA ATTCGCTGCA
GCGGGGGTTC GCTTTGAACA AATCACCACG GTTGGACAGA ACATTTTGCT GAGCGGGCTG
TTTATCGGTC TTATCATGCT GTTCCTGACC GACCGTTATT TGGTGGTGTG CTTGGTTCGC
CCGCTGAATG ACCTGCGCTA TCACTTTGGC GTGATTGCTT CTGGTCACTT GGGCAAGCCG
ATTCTGGACT TTGGTAATAA CTGCGTTGGC CGCCTATTTC CACTGCTGCG TGAAATGCAG
GGGAGTTTGG CTAGCACCGT TAGCACCATC AGAAACAGCA CGGACTCCAT CTATCAGGGG
GCTTCTGAGA TTGCTGCGGG TAATAACGAT CTGTCATCAC GTACCGAAGA GCAGGCTTCT
GCGTTAGAAG AAACGGCAGC CAGCATGGAG CAACTGACGG CGACGGTGAA ACAGAACGCA
GAAAATGCCA ATCACGCCAG CCAATTGGCA TTGCAAGCCT CAACAACGGC GAAGAAGGGT
GGGCAGATCG TCGAAAACGT GGTGAAAACC ATGGCAGAAA TCTCCGGCAG TTCGAGAAAA
ATCGCAGAAA TCACCACCGT GATTAACGGC ATTGCTTTCC AGACCAACAT TCTGGCGCTG
AACGCCGCGG TAGAAGCGGC GCGTGCGGGC GAACAAGGCC GTGGTTTTGC CGTGGTAGCC
GGAGAAGTAC GTAGTCTGGC GCAGCGTAGT GCACAGGCGG CGAAAGAGAT TGAAGGGCTG
ATTTCTGAAT CGGTCCGCTG TGTGGATACG GGTTCCAATT TGGTTAGCGA TGCCGGCGAC
ACCATGCAGG ATATCGTCCG CGCGGTCACT AACGTGACAG ATATTATGGG TGAAATTGCC
TCGGCATCTG AAGAACAGAG CAAAGGCATC GCACAGGTTG GTCAGGCTGT GGCGGAAATG
GACAGCGTAA CGCAGCAAAA TGCGGCATTG GTTGAACAGG CCTCTTCGGC TGCCTTGTCG
CTGGAAGAGC AGGCGGCGCT GTTGAACCAG ACTGTGTCCC TGTTCCAACT GTCCGATTCG
CAGTCAGCGC TGCAAGTGGC TGCAAAACCG GTGCAAAAAG CGGCAGTGAT TGCCCCGCGT
GCAGGCAAAG CGCTGCCAGC CAGTAGCGAC AACTGGGAAA AATTCTAA
|
|---|
| Protein sequence | MRLIKNIAIR TAMLWVLGIF CVLWGGVSIY TLFSFKEMTT TSKTSTLLVQ NMNFINQGND
QYFRMVTRLA RAVDARRSGD NATADKEQAS ALVALDKLKS DLVAFNAIDH AGLDNALVQA
VSRDWNSLVV QGVEPLYQKA VANALDDYQN QAKNIVPPLS RQFGASLSAF SSASAEKFAA
AGVRFEQITT VGQNILLSGL FIGLIMLFLT DRYLVVCLVR PLNDLRYHFG VIASGHLGKP
ILDFGNNCVG RLFPLLREMQ GSLASTVSTI RNSTDSIYQG ASEIAAGNND LSSRTEEQAS
ALEETAASME QLTATVKQNA ENANHASQLA LQASTTAKKG GQIVENVVKT MAEISGSSRK
IAEITTVING IAFQTNILAL NAAVEAARAG EQGRGFAVVA GEVRSLAQRS AQAAKEIEGL
ISESVRCVDT GSNLVSDAGD TMQDIVRAVT NVTDIMGEIA SASEEQSKGI AQVGQAVAEM
DSVTQQNAAL VEQASSAALS LEEQAALLNQ TVSLFQLSDS QSALQVAAKP VQKAAVIAPR
AGKALPASSD NWEKF
|
|---|
| |