Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1600 |
Symbol | |
ID | 6162619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1697384 |
End bp | 1699168 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664354 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001790632 |
Protein GI | 171058283 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00034667 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTTGAAA GCCTGCAGAC CGTGATGCGG CAGTTCTCGA TCCGCCTGCG CATGGCCGGA GCGGTGATCA TGGTGCTGGC GCTGTTTGCG CTGTTTGCCG CGCTTGCGCT GGGCATCGGC ATGAACCTGC AGCAGCAGAA CCGCCATTTC ATCGAGCACT CGATGGTCGA GCAGGGCCAT GTGACGCAGA TCCGCAGCCT GCTCGGCGAG GTGCAGGTGG CCGAGAAGAG CATGGTGATC GACTACGAGA ACGCCGAGCT GATGACGGCC CACCGCGCTG CCTGGGACAC CGCTGCCAAG GGGCTGCGCG CAGCGCTTGC CGCCATGATG GACGGCGAGG AAGACGCCGA CAACCTGGTC GCGCGCGACG CGATCGCCCG GCTCGACGAA TACCTCGCCA CCACCGGCAA GGCGGTCAGC AACGCCCAGG CGGGTGTCTA CGACAGTGCC AAGGCGGTCG ACCGGGTGCT CGAGCGGTCC AAGGTGCTGA TGGTCGGCGT GGTCAAGAAC GTGGCCGAGA TCCAGCAGAT CGTGGAGGCC GAAGCGGTCG CCACGCAGGC CGAGATCGAG GCCTCGACCC GCACCGCGCT GATGCTGTTC GCGGCCTCGC TGGCGCTGGT GGTGGTGCTG GTGACGCCGA TGACCTTGAT CAACTCGCGC AGCATCGTGC GTCCGATCGA CGAGGCACGC CGCTTTGCCG CCTCGATCGC CCAGGGCGAC CTGAGCGTGC GCCTGGCGGT GACGGGCCGC GACGAAGCGG CCGAGCTGAT GCGCGCGCTG GTCGAGATGC AGCAGTCGCT GCAGACGATG GTGGGCAGCA TCCGCAGCAG CGCCGAGTCG ATCTCGGTGG CCAGCACCGA AATCGCCAGC GGCAACCAGG ACCTGTCGGG CCGCACCGAA CAGACCGCCA GCAACCTGCA GCACGCCGCC AGCTCGATGG AGCACCTGAC CGGCACGGTG CGGCAGACCG CCGACTCGGC CCGCACCGCC AACCAGCTGG CCGTCTCGGC CGCCGAGGCC GCGCAGCGCG GTGGCAGCGT GGTCTCGCAG GTGGTCACCA ACATGGAGGA GATCAACGCC AGCTCGAAGA AGATCGCCGA CATCATCGGC GTGATCGACG GCATCGCCTT CCAGACCAAC ATCCTGGCGC TCAATGCGGC CGTCGAAGCG GCGCGCGCCG GTGAACAGGG CCGCGGCTTC GCGGTCGTGG CCGGCGAGGT GCGCAACCTG GCGCAGCGCA GCGCCAACGC GGCGCGCGAG ATCAAGAGCC TGATCGGCGC CAGCGTCGAC AAGGTCGAGA GCGGCGCACG CCTGGTGCAC GACGCCGGCA GCACGATGAG CGAGATCGTC TCCAGCGTGC AGCGGGTCAC CGACATCATC GGCGAGATCA CCGCGGCCAC CACCGAGCAG AGCGGCGAGC TCGGCCAGGT CAACGCCACC GTCAACCAGC TCGATCAGAT GACGCAGCAG AACGCCGCGC TGGTCGAGCA GAGCGCGGCC GCAGCCGAGA GCCTGAAGGA GCAGGCGCTC AAGCTGTCCG ACGTGGTGAA GGCCTTCACC GTCGGCAGCG GCGCAATGGG CGGCGACAGC CCGGTGTCGT ACACCGCCGT GCCGTCGATG CCCGCACGGC CGGTCACATC GACCTACCAG CCCAAGCCGG TGCCGGTGTC CGCGCCCAAG GCGGCTCCGC CTGCTCCCCG CGCCGAGGCG CCGGCCAAGG CCGAACCCCG GGCAGAACCG CAGGCTGCGA TGGCGACATC CGACGGCGAC TGGGAAACCT TCTGA
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Protein sequence | MFESLQTVMR QFSIRLRMAG AVIMVLALFA LFAALALGIG MNLQQQNRHF IEHSMVEQGH VTQIRSLLGE VQVAEKSMVI DYENAELMTA HRAAWDTAAK GLRAALAAMM DGEEDADNLV ARDAIARLDE YLATTGKAVS NAQAGVYDSA KAVDRVLERS KVLMVGVVKN VAEIQQIVEA EAVATQAEIE ASTRTALMLF AASLALVVVL VTPMTLINSR SIVRPIDEAR RFAASIAQGD LSVRLAVTGR DEAAELMRAL VEMQQSLQTM VGSIRSSAES ISVASTEIAS GNQDLSGRTE QTASNLQHAA SSMEHLTGTV RQTADSARTA NQLAVSAAEA AQRGGSVVSQ VVTNMEEINA SSKKIADIIG VIDGIAFQTN ILALNAAVEA ARAGEQGRGF AVVAGEVRNL AQRSANAARE IKSLIGASVD KVESGARLVH DAGSTMSEIV SSVQRVTDII GEITAATTEQ SGELGQVNAT VNQLDQMTQQ NAALVEQSAA AAESLKEQAL KLSDVVKAFT VGSGAMGGDS PVSYTAVPSM PARPVTSTYQ PKPVPVSAPK AAPPAPRAEA PAKAEPRAEP QAAMATSDGD WETF
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