More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1383 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  100 
 
 
705 aa  1419    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0984  methyl-accepting chemotaxis sensory transducer  51.57 
 
 
608 aa  361  2e-98  Ruegeria sp. TM1040  Bacteria  normal  0.0666136  normal  0.983928 
 
 
-
 
NC_008044  TM1040_2453  methyl-accepting chemotaxis sensory transducer  56.68 
 
 
788 aa  358  1.9999999999999998e-97  Ruegeria sp. TM1040  Bacteria  normal  0.925334  normal  0.122382 
 
 
-
 
NC_008044  TM1040_0839  methyl-accepting chemotaxis sensory transducer  56.44 
 
 
927 aa  352  1e-95  Ruegeria sp. TM1040  Bacteria  normal  0.587759  normal  0.752939 
 
 
-
 
NC_008044  TM1040_0359  methyl-accepting chemotaxis sensory transducer  54.11 
 
 
927 aa  348  2e-94  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3209  methyl-accepting chemotaxis sensory transducer  48.77 
 
 
782 aa  347  3e-94  Ruegeria sp. TM1040  Bacteria  normal  0.684679  normal 
 
 
-
 
NC_010338  Caul_0276  methyl-accepting chemotaxis sensory transducer  41.29 
 
 
657 aa  328  2.0000000000000001e-88  Caulobacter sp. K31  Bacteria  normal  0.461968  normal  0.560518 
 
 
-
 
NC_008043  TM1040_3177  methyl-accepting chemotaxis sensory transducer  50.88 
 
 
749 aa  328  2.0000000000000001e-88  Ruegeria sp. TM1040  Bacteria  normal  0.726311  normal 
 
 
-
 
NC_010338  Caul_0236  methyl-accepting chemotaxis sensory transducer  46.86 
 
 
660 aa  326  8.000000000000001e-88  Caulobacter sp. K31  Bacteria  normal  0.105118  normal 
 
 
-
 
NC_008044  TM1040_2002  methyl-accepting chemotaxis sensory transducer  57.24 
 
 
530 aa  323  5e-87  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1449  methyl-accepting chemotaxis sensory transducer  47.33 
 
 
647 aa  319  1e-85  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_1798  methyl-accepting chemotaxis sensory transducer  47.34 
 
 
615 aa  317  7e-85  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.371991  normal 
 
 
-
 
NC_010338  Caul_0222  methyl-accepting chemotaxis sensory transducer  51.37 
 
 
642 aa  316  9e-85  Caulobacter sp. K31  Bacteria  normal  0.414219  normal  0.376796 
 
 
-
 
NC_010581  Bind_3620  methyl-accepting chemotaxis sensory transducer  48.01 
 
 
677 aa  315  1.9999999999999998e-84  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0125911 
 
 
-
 
NC_008043  TM1040_3194  methyl-accepting chemotaxis sensory transducer  49.76 
 
 
614 aa  314  2.9999999999999996e-84  Ruegeria sp. TM1040  Bacteria  normal  0.311641  normal 
 
 
-
 
NC_009636  Smed_0051  methyl-accepting chemotaxis sensory transducer  43.17 
 
 
796 aa  309  1.0000000000000001e-82  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.000000874578 
 
 
-
 
NC_010338  Caul_1141  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  56.96 
 
 
501 aa  306  7e-82  Caulobacter sp. K31  Bacteria  normal  0.489477  hitchhiker  0.000166409 
 
 
-
 
NC_010335  Caul_5142  methyl-accepting chemotaxis sensory transducer  45.26 
 
 
599 aa  306  8.000000000000001e-82  Caulobacter sp. K31  Bacteria  normal  0.367406  normal  0.838811 
 
 
-
 
NC_011989  Avi_1208  methyl-accepting chemotaxis protein  46.06 
 
 
604 aa  305  2.0000000000000002e-81  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2177  methyl-accepting chemotaxis sensory transducer  44.55 
 
 
602 aa  299  1e-79  Caulobacter sp. K31  Bacteria  normal  0.180362  normal  0.483778 
 
 
-
 
NC_011989  Avi_2608  methyl-accepting chemotaxis protein  49.45 
 
 
655 aa  298  2e-79  Agrobacterium vitis S4  Bacteria  normal  0.445883  n/a   
 
 
-
 
NC_009484  Acry_2705  methyl-accepting chemotaxis sensory transducer  49.31 
 
 
509 aa  298  3e-79  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3360  methyl-accepting chemotaxis sensory transducer  51.16 
 
 
648 aa  297  4e-79  Jannaschia sp. CCS1  Bacteria  normal  0.59059  normal 
 
 
-
 
NC_009484  Acry_0520  methyl-accepting chemotaxis sensory transducer  46.76 
 
 
636 aa  297  5e-79  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5092  methyl-accepting chemotaxis sensory transducer  43.52 
 
 
626 aa  296  9e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.359668  normal  0.0114189 
 
 
-
 
NC_011369  Rleg2_0052  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
778 aa  295  1e-78  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0947231 
 
 
-
 
NC_008043  TM1040_3179  methyl-accepting chemotaxis sensory transducer  48.56 
 
 
885 aa  295  2e-78  Ruegeria sp. TM1040  Bacteria  normal  normal  0.498273 
 
 
-
 
NC_010338  Caul_4292  methyl-accepting chemotaxis sensory transducer  53.97 
 
 
535 aa  295  3e-78  Caulobacter sp. K31  Bacteria  normal  normal  0.432431 
 
 
-
 
NC_011368  Rleg2_5372  methyl-accepting chemotaxis sensory transducer  41.54 
 
 
627 aa  293  5e-78  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.756404 
 
 
-
 
NC_011988  Avi_5151  methyl-accepting chemotaxis protein  44.56 
 
 
776 aa  293  6e-78  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2590  methyl-accepting chemotaxis sensory transducer  46.01 
 
 
642 aa  293  6e-78  Acidiphilium cryptum JF-5  Bacteria  normal  0.156907  n/a   
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  39.54 
 
 
698 aa  292  1e-77  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_012850  Rleg_3005  methyl-accepting chemotaxis sensory transducer  44.14 
 
 
665 aa  292  1e-77  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0980  methyl-accepting chemotaxis protein  43.59 
 
 
611 aa  292  2e-77  Agrobacterium vitis S4  Bacteria  normal  0.442512  n/a   
 
 
-
 
NC_011988  Avi_5554  methyl-accepting chemotaxis protein  44.94 
 
 
653 aa  290  6e-77  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_010338  Caul_2435  methyl-accepting chemotaxis sensory transducer  50.45 
 
 
507 aa  290  7e-77  Caulobacter sp. K31  Bacteria  normal  0.264745  normal  0.414024 
 
 
-
 
NC_011989  Avi_1200  methyl-accepting chemotaxis protein  43.32 
 
 
728 aa  289  1e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1117  methyl-accepting chemotaxis protein  44.97 
 
 
657 aa  289  1e-76  Agrobacterium vitis S4  Bacteria  normal  0.593573  n/a   
 
 
-
 
NC_011989  Avi_2928  methyl-accepting chemotaxis protein  33.42 
 
 
792 aa  287  4e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1201  methyl-accepting chemotaxis protein  41.19 
 
 
728 aa  287  5e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011984  Avi_9088  methyl-accepting chemotaxis protein  46.15 
 
 
761 aa  284  4.0000000000000003e-75  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3445  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.39 
 
 
746 aa  283  9e-75  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.2502  normal 
 
 
-
 
NC_010581  Bind_0110  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.74 
 
 
588 aa  283  9e-75  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.885184  normal  0.0508963 
 
 
-
 
NC_010338  Caul_1355  methyl-accepting chemotaxis sensory transducer  54.86 
 
 
494 aa  283  1e-74  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0214  methyl-accepting chemotaxis sensory transducer  45.25 
 
 
663 aa  281  2e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.287216 
 
 
-
 
NC_012848  Rleg_5069  methyl-accepting chemotaxis sensory transducer  42.92 
 
 
714 aa  281  2e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.277036  normal 
 
 
-
 
NC_011989  Avi_0452  methyl-accepting chemotaxis protein  43.35 
 
 
622 aa  282  2e-74  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3729  methyl-accepting chemotaxis protein  45.11 
 
 
644 aa  281  2e-74  Agrobacterium vitis S4  Bacteria  normal  0.554142  n/a   
 
 
-
 
NC_009484  Acry_2144  methyl-accepting chemotaxis sensory transducer  53.21 
 
 
556 aa  281  2e-74  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0697  methyl-accepting chemotaxis sensory transducer  46.48 
 
 
610 aa  281  3e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2927  methyl-accepting chemotaxis protein  41.61 
 
 
730 aa  281  3e-74  Agrobacterium vitis S4  Bacteria  normal  0.0257741  n/a   
 
 
-
 
NC_011365  Gdia_2195  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.27 
 
 
577 aa  281  4e-74  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4113  methyl-accepting chemotaxis protein  46.25 
 
 
778 aa  281  4e-74  Agrobacterium vitis S4  Bacteria  normal  0.433818  n/a   
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  39.19 
 
 
740 aa  280  5e-74  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0369  methyl-accepting chemotaxis sensory transducer  43.17 
 
 
615 aa  280  8e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00881781 
 
 
-
 
NC_011369  Rleg2_0185  methyl-accepting chemotaxis sensory transducer  45.23 
 
 
669 aa  279  1e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1027  methyl-accepting chemotaxis sensory transducer  47.04 
 
 
795 aa  279  1e-73  Ruegeria sp. TM1040  Bacteria  normal  normal  0.551962 
 
 
-
 
NC_009636  Smed_2051  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
717 aa  279  1e-73  Sinorhizobium medicae WSM419  Bacteria  normal  0.245091  normal  0.347836 
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  51.49 
 
 
622 aa  279  1e-73  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0994  methyl-accepting chemotaxis protein  44.64 
 
 
649 aa  278  2e-73  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5354  methyl-accepting chemotaxis sensory transducer  42.03 
 
 
714 aa  278  3e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.642158  normal  0.0994281 
 
 
-
 
NC_011370  Rleg2_6126  methyl-accepting chemotaxis sensory transducer  43.88 
 
 
650 aa  277  4e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.375381  normal  0.0878449 
 
 
-
 
NC_011369  Rleg2_0640  methyl-accepting chemotaxis sensory transducer  44.86 
 
 
604 aa  276  1.0000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.122515  normal  0.297773 
 
 
-
 
NC_012850  Rleg_0401  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
615 aa  275  2.0000000000000002e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000192098 
 
 
-
 
NC_011369  Rleg2_0368  methyl-accepting chemotaxis sensory transducer  41.98 
 
 
843 aa  275  2.0000000000000002e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0662296 
 
 
-
 
NC_011989  Avi_0806  methyl-accepting chemotaxis protein  39.92 
 
 
842 aa  275  2.0000000000000002e-72  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4524  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
661 aa  275  2.0000000000000002e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.66296 
 
 
-
 
NC_012850  Rleg_0943  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.03 
 
 
793 aa  275  2.0000000000000002e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.27721  normal 
 
 
-
 
NC_011369  Rleg2_0626  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.96 
 
 
726 aa  275  3e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6402  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
688 aa  274  4.0000000000000004e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.579482  normal  0.320846 
 
 
-
 
NC_010338  Caul_3214  methyl-accepting chemotaxis sensory transducer  51.42 
 
 
532 aa  274  4.0000000000000004e-72  Caulobacter sp. K31  Bacteria  normal  normal  0.409706 
 
 
-
 
NC_011369  Rleg2_3632  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.12 
 
 
592 aa  274  4.0000000000000004e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.377399 
 
 
-
 
NC_011369  Rleg2_0563  methyl-accepting chemotaxis sensory transducer  43.99 
 
 
645 aa  273  6e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.73856 
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  43.14 
 
 
695 aa  272  1e-71  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3647  methyl-accepting chemotaxis protein  43.55 
 
 
680 aa  272  1e-71  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0400  methyl-accepting chemotaxis sensory transducer  41.79 
 
 
843 aa  272  1e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00170819 
 
 
-
 
NC_011989  Avi_3714  methyl-accepting chemotaxis protein  39.86 
 
 
679 aa  273  1e-71  Agrobacterium vitis S4  Bacteria  normal  0.0885803  n/a   
 
 
-
 
NC_011989  Avi_2775  methyl-accepting chemotaxis protein  51.86 
 
 
558 aa  271  2.9999999999999997e-71  Agrobacterium vitis S4  Bacteria  normal  0.536477  n/a   
 
 
-
 
NC_012850  Rleg_0098  methyl-accepting chemotaxis sensory transducer  39.49 
 
 
665 aa  270  8e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.713215  normal 
 
 
-
 
NC_012850  Rleg_0581  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.84 
 
 
607 aa  269  1e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.893675 
 
 
-
 
NC_012848  Rleg_4670  methyl-accepting chemotaxis sensory transducer  41.09 
 
 
625 aa  269  1e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.817515 
 
 
-
 
NC_009636  Smed_2893  methyl-accepting chemotaxis sensory transducer  50.98 
 
 
589 aa  269  1e-70  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0221  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.75 
 
 
785 aa  268  2e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0305  methyl-accepting chemotaxis sensory transducer  39.82 
 
 
841 aa  268  2e-70  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1159  methyl-accepting chemotaxis protein  41.72 
 
 
671 aa  268  2e-70  Agrobacterium vitis S4  Bacteria  normal  0.573311  n/a   
 
 
-
 
NC_011989  Avi_2600  methyl-accepting chemotaxis protein  41.4 
 
 
633 aa  267  4e-70  Agrobacterium vitis S4  Bacteria  normal  0.390364  n/a   
 
 
-
 
NC_012850  Rleg_3921  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.08 
 
 
586 aa  267  5e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
669 aa  266  8e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1790  methyl-accepting chemotaxis sensory transducer  51.76 
 
 
694 aa  266  8e-70  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0681  methyl-accepting chemotaxis sensory transducer  48.18 
 
 
481 aa  266  1e-69  Acidiphilium cryptum JF-5  Bacteria  normal  0.123667  n/a   
 
 
-
 
NC_011368  Rleg2_4811  methyl-accepting chemotaxis sensory transducer  44.81 
 
 
625 aa  265  2e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.327513  normal 
 
 
-
 
NC_011368  Rleg2_5523  methyl-accepting chemotaxis sensory transducer  44.66 
 
 
616 aa  265  2e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00344787 
 
 
-
 
NC_012850  Rleg_0606  methyl-accepting chemotaxis sensory transducer  44.62 
 
 
644 aa  265  2e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.307243 
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  30.47 
 
 
653 aa  265  2e-69  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2860  methyl-accepting chemotaxis protein  42.23 
 
 
668 aa  265  2e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0083  methyl-accepting chemotaxis sensory transducer  38.88 
 
 
665 aa  265  3e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0972557  normal  0.565594 
 
 
-
 
NC_008044  TM1040_0476  methyl-accepting chemotaxis sensory transducer  41.3 
 
 
589 aa  265  3e-69  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1387  methyl-accepting chemotaxis sensory transducer  46.63 
 
 
615 aa  263  6.999999999999999e-69  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0958  methyl-accepting chemotaxis protein  40.53 
 
 
610 aa  263  8.999999999999999e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0537  methyl-accepting chemotaxis sensory transducer  39.63 
 
 
605 aa  262  1e-68  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.180661 
 
 
-
 
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