Gene Avi_1159 details

Gene Information

• Locus tag: Avi_1159
• Symbol: mcpA
• ID: 7386219
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 977756
• End bp: 979771
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650625
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002548831
• Protein GI: 222147874
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.573311
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTTG GAATTACACG TATAGGAAGC AAACTCTCGG TCATGTCCGG TGCAGGCATT 
GTCCTTGTCC TCATCATCTC GGTCGCCGGA TGGGTTTTGT CGCGAGCGGT CGACAGGGCT 
GTCACCCAGG GCCAGGTCCA GTCCGGGATC GCCCGCAATA TCATCGATAT GAAAGCGTCT 
TTGCGCGGCA TGGATATCGG CGTGGGCGAA CTGCGCCTGG CAACGTCCCA GCAGCAGCAA 
CAGGCCGCAG TCGAGTATTT CCAGCAACGG CACAGTTCCG CCGAGAAATA TCTAAACCTC 
GCCAGGGCCG ATATGCGATT GCCCGCCAAT CAGGAGCGGG CTCGCCGCAT TGGCGAACTG 
CTGACCAATT ACAGCGCGGC CATCACCCAA TTGGCAACCG TCATCGGTCG TTCTTCGGCA 
GATGTCTCCG CCAGCCTGCC GCCTCTGAAA AAAATGAACG ACGAACTGGC CGCCCTTGTT 
GATGAGACGG TGATTGCTGT CAAGCAGAAG GTCGAGGAGA CCAACGAAGA GCGCCTTCAT 
CTGCAAAATA CCGCCTCGGC GATTACCCTT TGTCTCTCGG TTTTGCTGGT GACGCTGATG 
ATCGGCTCGG CGCTCTTCGG ACGCCGGGCG ATTGCGGCGC CCATCCAGCG GATCACCGAT 
TGCATGGCAG ACCTGGCCAA GGGCGATTTG TCCAAAACCA TCCCCTATGC AAGTAACAAG 
GATGAGATCG GCGACATGGC CCGCGCCGTG CTGGTCTTCA AACAGAATGC GGAAAAGGTT 
CGTGATCTCA ATGCGCAGGA AGTCGCGCTC CAGGCTCAGA ATGCGGATTT GCAGAGCAAT 
ATTTCCCACG TCGTGTCATC GGCGGTTGCG GGCGATTTTT CCGCTCGCAT TCAAAAGCGC 
TATGACAACG AAGACCTGAA TCGCTTCGCT GCCAGCGTCA ACCAGTTGGT GACCTCTGTC 
GATCTGGGTG TAGCTGAAAC CAATCGCGTG GTCGCGGCTC TGGCCGAAGG CGATCTGACC 
GAAGCCATGC GCGGCGAGTT CAAGGGCGTG TTCCTCAATT TGCAGACAAA CATGAACGCG 
ACCATGGAGA GCCTGCGGGT GGTGATGACG GAAGTCCGCG GCGCTATCGA CATGATCAAG 
AGTGGCGCGG GCGAACTGCG CCATGCCTCC TCCGATCTGT CCAAGCGTTC GGAGCAGCAG 
GCGGCCTCTT TGGAGGAAAC CGCAGCAGCA CTCGAGGAGA TAACATCCGC CGTGAAGAGT 
TCCACTGACC GTTCGGGTGA GGCCGCCGAG ATGGTTGCCC AGGCGCGTCA AAGCACCGAA 
CAGTCCCGCG ACGTGGTCAG AAATACGGTT GCCGCCATGG AGCGCATCGA GCAGGCCTCC 
AACGAGATCG GCAACATCAT CAATGTCATC GACGAAATCG CTTTCCAGAC CAATCTTTTG 
GCGCTGAATG CTGGCGTTGA AGCCGCCCGT GCGGGTGAGG CTGGCAAGGG CTTTGCCGTG 
GTTGCCCAGG AAGTGCGCGA ACTGGCACAA CGCTCGGCGG GCGCCGCCAA GGACATCAAG 
ACGCTGATCA CCCGCTCTCG CAACGAGGTG GCCGACGGCG TGGCCCTGGT GACGGAGACG 
GGTGACGTGC TGGGCACCAT CGGCAGCCAT GTCGTGAAGA TCAATGAACA TGTCCATTCC 
ATCGCCCAGG CCGCCAGGGA GCAATCGACC GGTCTGAGCG AGATCAATAC TGCCATCAAC 
CAGATGGACC AGACGACACA GCAGAATGCG GCCATGGTCG AGGAATCGAC CGCCGCCACC 
AATAAACTGG CCGACGAGGC GAGTAATCTC TCCACGCTGG TGGCGCGTTT CAAAGTACAC 
ACCGGTACGC AGGCGTCGGC CCCATCCCGC CCAGTCTCGT CCCACTCGGC GCCCTCCCAT 
TCCGCAATGG CCTCTGCCCC TGCGGGGCGG CGACCCGTGT CCTCCAGCCG AGGTAATACC 
GCCCTGGCGA TCGAAAAGGA TTGGGAGGAG TTCTGA 

 

Protein sequence

MAFGITRIGS KLSVMSGAGI VLVLIISVAG WVLSRAVDRA VTQGQVQSGI ARNIIDMKAS 
LRGMDIGVGE LRLATSQQQQ QAAVEYFQQR HSSAEKYLNL ARADMRLPAN QERARRIGEL 
LTNYSAAITQ LATVIGRSSA DVSASLPPLK KMNDELAALV DETVIAVKQK VEETNEERLH 
LQNTASAITL CLSVLLVTLM IGSALFGRRA IAAPIQRITD CMADLAKGDL SKTIPYASNK 
DEIGDMARAV LVFKQNAEKV RDLNAQEVAL QAQNADLQSN ISHVVSSAVA GDFSARIQKR 
YDNEDLNRFA ASVNQLVTSV DLGVAETNRV VAALAEGDLT EAMRGEFKGV FLNLQTNMNA 
TMESLRVVMT EVRGAIDMIK SGAGELRHAS SDLSKRSEQQ AASLEETAAA LEEITSAVKS 
STDRSGEAAE MVAQARQSTE QSRDVVRNTV AAMERIEQAS NEIGNIINVI DEIAFQTNLL 
ALNAGVEAAR AGEAGKGFAV VAQEVRELAQ RSAGAAKDIK TLITRSRNEV ADGVALVTET 
GDVLGTIGSH VVKINEHVHS IAQAAREQST GLSEINTAIN QMDQTTQQNA AMVEESTAAT 
NKLADEASNL STLVARFKVH TGTQASAPSR PVSSHSAPSH SAMASAPAGR RPVSSSRGNT 
ALAIEKDWEE F