Gene Avi_0452 details

Gene Information

• Locus tag: Avi_0452
• Symbol: mcpC
• ID: 7388462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 384842
• End bp: 386710
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650106
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002548321
• Protein GI: 222147364
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGTCA TCCTCCTCGG CCTTTTCAGC TACAAGCAGA CGTCCGTGGT CTTTTCGGCA 
GCCTCCGATA CGCGGCAGGT GTGGATGCCA CGGATGGCGA AACTGGATGG CATTCAGTTT 
ACCATGTTGC GCTATCACAC GACGACGATC CGCAAAACCA TTGCTGTCGA TCCCTCCGAA 
ATCAAAGGGT TGGATGACGA ATTCGTGGAA ATGGACGCAT CCATTCCGAA ATCCTATGCG 
GATTTCCGCG CAACCCTGCG CAACGATGCT GAGAAGAAAT TGTGGGGCGA TTTCGAAGCC 
AAGTGGACCC GCTATCTCGA ATTTCAAAAG AAGATCATCA ACGCCGTCGC CGCCAAGGAT 
CAGGTTGCAG CAACCGCCGC AATCGCCCCA GCCCGTCAGC CGCTGGTCGA CAGCTTCATT 
GCGCTTGGCG AAATCATCAA GCTCAACGAT AGCGGTGCGG CAGCGTCAAG CACGGCTGCC 
GAGGCTGCCT ATACGCAGTC CTCCTATGTC ACCATTGGCG TCATTCTGTT CGGCGTGCTG 
TTGATGAGCA TCCTGACCGT CTGGATCATC CTGGGCGTGT CACGCCCTGT GACCCGCATG 
GCAAAGGTGA TGCTGCATAT TGCCGATGGC AAGCTGGATG TCACGGTACC CGACGCCGAC 
CGCAAGGACG AAATCGGGGA AATGGCTGGC GCCGTCGAAG TCATGCGCCA GTCGGCCCTG 
GCGAAAGTTC AGCTGGAAGC ACAGACCGAA CAGAACCGGC TCAATGCGGA GCAGGAACGC 
AAGGATGTCC AGCGCCGCGC CGAGGAAGAT GCGGAACGCC GCCTGAACGA AGCAACGGGC 
GCACTGGCCG CTGGCCTGAA GCGGCTGGCC TCCTGCGACC TTCTCTGCGA AATCGATCAG 
CAGTTTGCCG CCCAGTTCGA ACCACTTCGC CACGACTTCA ATGCCTCCGT CAACCAGTTG 
CGCTCAGCAC TCGTGGCTGT GGGCCAGGTT GGCAAGGGTG TCACCAATGG CAGCGGTGAA 
ATTTCGCAGG CTTCCGACAC GCTGGCCAAG CGCACTGAAC AGCAGGCCGC CTCGCTAGAG 
GAAACCGCGG CCGCGCTGGA GCAGATCACT TCCAACGTCC AAGCAACGTC CAAGCGGACT 
GGCGAAGCCC GCAATCTGGT GCGCAATGCC CGCCAGCATG CCGAACATTC GGCGACCGTG 
GTCAACAATG CCGTCTCCGC CATGGAGCGG ATCGAGGATG CTTCGCGCAA GATCACCCAG 
ATCATCAGCG TGATCGACGA GATCGCCTTC CAGACTAACC TTCTGGCCTT GAATGCGGGG 
GTCGAGGCTG CCCGCGCTGG TGAAGCAGGC AAGGGCTTTG CGGTCGTTGC CCAGGAAGTG 
CGCGAACTGG CGCAACGTTC CGCCAATGCC GCCAAGGAAA TCAAGTCGCT GATCGGCAAT 
TCGGAAGCGG CTGTCAGCGA AGGCGTTAAG CTGGTCAACG ATACTGGCGA AGGCCTGACG 
ACCATTTCCA AGGTGGTCGA GGACATGAAC CAGCATATGG ATGCCATTGC GACGGCAGCC 
CAGGAACAGG CCAGCGGTTT GGCGGAGGTC AATACCGCCG TCAACCATAT GGATCAGGCG 
ACTCAGCAGA ATGCCGCCAT GGTGGAAGAA ATGAATGCCG CCGGGGCTGG TCTCAATCAG 
GAAAGCCGTC GCCTTTCGGA TCTGCTCGCG CAATTTAGAA CCGGAAACGA TATCGCCCAG 
CCAGTGCGCT CGGCTCCTGC CTCGCCTGCG CCTGCGCCCA GAGCGCAGGC CCCGCGCAGA 
GCCCAGCAGT CTGTTCCGGT CAGCCATGGC AATGCCGCCG TCAGCCGCGA CAATTGGGAG 
GAATTCTGA 

 

Protein sequence

MLVILLGLFS YKQTSVVFSA ASDTRQVWMP RMAKLDGIQF TMLRYHTTTI RKTIAVDPSE 
IKGLDDEFVE MDASIPKSYA DFRATLRNDA EKKLWGDFEA KWTRYLEFQK KIINAVAAKD 
QVAATAAIAP ARQPLVDSFI ALGEIIKLND SGAAASSTAA EAAYTQSSYV TIGVILFGVL 
LMSILTVWII LGVSRPVTRM AKVMLHIADG KLDVTVPDAD RKDEIGEMAG AVEVMRQSAL 
AKVQLEAQTE QNRLNAEQER KDVQRRAEED AERRLNEATG ALAAGLKRLA SCDLLCEIDQ 
QFAAQFEPLR HDFNASVNQL RSALVAVGQV GKGVTNGSGE ISQASDTLAK RTEQQAASLE 
ETAAALEQIT SNVQATSKRT GEARNLVRNA RQHAEHSATV VNNAVSAMER IEDASRKITQ 
IISVIDEIAF QTNLLALNAG VEAARAGEAG KGFAVVAQEV RELAQRSANA AKEIKSLIGN 
SEAAVSEGVK LVNDTGEGLT TISKVVEDMN QHMDAIATAA QEQASGLAEV NTAVNHMDQA 
TQQNAAMVEE MNAAGAGLNQ ESRRLSDLLA QFRTGNDIAQ PVRSAPASPA PAPRAQAPRR 
AQQSVPVSHG NAAVSRDNWE EF